An improved algorithm for nucleic acid secondary structure display. - Robert E. Bruccoleri; Gerhard Heinrich (Comput. Appl. Biosci., 1988)

Grid positioning independence and the reduction of self-energy in the solution of the Poisson - Boltzmann equation. - Robert E. Bruccoleri (J. Comput. Chem., 1993)

Energy directed conformational search of protein loops and segments. - Robert E. Bruccoleri (Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding, 1995)

WRAPGEN - A Tool for the Use of Fortran and C Together in Portable Programs. - Robert E. Bruccoleri (ACM SIGPLAN Notices, 1996)

Finite difference Poisson-Boltzmann electrostatic calculations: Increased accuracy achieved by harmonic dielectric smoothing and charge antialiasing. - Robert E. Bruccoleri; Jiri Novotny; Malcolm E. Davis; Kim A. Sharp (J. Comput. Chem., 1997)

Transcriptional Profiling of the Dose Response: A More Powerful Approach for Characterizing Drug Activities. - Rui-Ru Ji; Heshani de Silva; Yisheng Jin; Robert E. Bruccoleri; Jian Cao; Aiqing He; Wenjun Huang; Paul S. Kayne; Isaac Neuhaus; Karl-Heinz Ott; Becky Penhallow; Mark I. Cockett; et al. (PLoS Comput. Biol., 2009)

SDRS - an algorithm for analyzing large-scale dose-response data. - Rui-Ru Ji; Nathan O. Siemers; Ming Lei; Liang Schweizer; Robert E. Bruccoleri (Bioinform., 2011)

antiSMASH 3.0 - a comprehensive resource for the genome mining of biosynthetic gene clusters. - Tilmann Weber; Kai Blin; Srikanth Duddela; Daniel Krug; Hyun Uk Kim; Robert E. Bruccoleri; Sang Yup Lee; Michael A. Fischbach; Rolf Müller 002; Wolfgang Wohlleben; Rainer Breitling; Eriko Takano; et al. (Nucleic Acids Res., 2015)