A generalised framework for super-resolution track-weighted imaging. - Fernando Calamante; Jacques-Donald Tournier; Robert E. Smith 002; Alan Connelly (NeuroImage, 2012)

Anatomically-constrained tractography: Improved diffusion MRI streamlines tractography through effective use of anatomical information. - Robert E. Smith 002; Jacques-Donald Tournier; Fernando Calamante; Alan Connelly (NeuroImage, 2012)

Track-weighted functional connectivity (TW-FC): A tool for characterizing the structural-functional connections in the brain. - Fernando Calamante; Richard A. J. Masterton; Jacques-Donald Tournier; Robert E. Smith 002; Lisa Willats; David Raffelt; Alan Connelly (NeuroImage, 2013)

SIFT: Spherical-deconvolution informed filtering of tractograms. - Robert E. Smith 002; Jacques-Donald Tournier; Fernando Calamante; Alan Connelly (NeuroImage, 2013)

Toward making diffusion MRI streamlines tractography a robust neuroscientific tool. - Robert Elton Smith (2013)

Quantification of track-weighted imaging (TWI): Characterisation of within-subject reproducibility and between-subject variability. - Lisa Willats; David Raffelt; Robert E. Smith 002; Jacques-Donald Tournier; Alan Connelly; Fernando Calamante (NeuroImage, 2014)

Quantification of voxel-wise total fibre density: Investigating the problems associated with track-count mapping. - Fernando Calamante; Robert E. Smith 002; Jacques-Donald Tournier; David Raffelt; Alan Connelly (NeuroImage, 2015)

Connectivity-based fixel enhancement: Whole-brain statistical analysis of diffusion MRI measures in the presence of crossing fibres. - David A. Raffelt; Robert E. Smith 002; Gerard R. Ridgway; Jacques-Donald Tournier; David N. Vaughan; Stephen E. Rose; Robert D. Henderson; Alan Connelly (NeuroImage, 2015)

The effects of SIFT on the reproducibility and biological accuracy of the structural connectome. - Robert E. Smith 002; Jacques-Donald Tournier; Fernando Calamante; Alan Connelly (NeuroImage, 2015)

SIFT2: Enabling dense quantitative assessment of brain white matter connectivity using streamlines tractography. - Robert E. Smith 002; Jacques-Donald Tournier; Fernando Calamante; Alan Connelly (NeuroImage, 2015)

The contribution of geometry to the human connectome. - James A. Roberts 002; Alistair Perry; Anton R. Lord; Gloria M. P. Roberts; Philip B. Mitchell; Robert E. Smith 002; Fernando Calamante; Michael Breakspear (NeuroImage, 2016)

Correction for diffusion MRI fibre tracking biases: The consequences for structural connectomic metrics. - Chun-Hung Yeh; Robert E. Smith 002; Xiaoyun Liang 001; Fernando Calamante; Alan Connelly (NeuroImage, 2016)

Investigating white matter fibre density and morphology using fixel-based analysis. - David A. Raffelt; Jacques-Donald Tournier; Robert E. Smith 002; David N. Vaughan; Graeme D. Jackson; Gerard R. Ridgway; Alan Connelly (NeuroImage, 2017)

BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. - Krzysztof J. Gorgolewski; Fidel Alfaro-Almagro; Tibor Auer; Pierre Bellec; Mihai Capota; M. Mallar Chakravarty; Nathan William Churchill; Alexander Li Cohen; R. Cameron Craddock; Gabriel A. Devenyi; Anders Eklund 002; Oscar Esteban; et al. (PLoS Comput. Biol., 2017)

Is removal of weak connections necessary for graph-theoretical analysis of dense weighted structural connectomes from diffusion MRI? - Oren Civier; Robert Elton Smith; Chun-Hung Yeh; Alan Connelly; Fernando Calamante (NeuroImage, 2019)

MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation. - Jacques-Donald Tournier; Robert E. Smith 002; David Raffelt; Rami Tabbara; Thijs Dhollander; Maximilian Pietsch; Daan Christiaens; Ben Jeurissen; Chun-Hung Yeh; Alan Connelly (NeuroImage, 2019)

Connectomes from streamlines tractography: Assigning streamlines to brain parcellations is not trivial but highly consequential. - Chun-Hung Yeh; Robert E. Smith 002; Thijs Dhollander; Fernando Calamante; Alan Connelly (NeuroImage, 2019)

Maturation and interhemispheric asymmetry in neurite density and orientation dispersion in early childhood. - Dennis Dimond; Stella Heo; Amanda Ip; Christiane S. Rohr; Ryann Tansey; Kirk Graff; Thijs Dhollander; Robert E. Smith 002; Catherine Lebel; Deborah Dewey; Alan Connelly; Signe Bray (NeuroImage, 2020)

Early childhood development of white matter fiber density and morphology. - Dennis Dimond; Christiane S. Rohr; Robert E. Smith 002; Thijs Dhollander; Ivy Cho; Catherine Lebel; Deborah Dewey; Alan Connelly; Signe Bray (NeuroImage, 2020)

The efficacy of different preprocessing steps in reducing motion-related confounds in diffusion MRI connectomics. - Stuart Oldham; Aurina Arnatkeviciute; Robert E. Smith 002; Jeggan Tiego; Mark A. Bellgrove; Alex Fornito (NeuroImage, 2020)

Characterisation of white matter asymmetries in the healthy human brain using diffusion MRI fixel-based analysis. - Arush Honnedevasthana Arun; Alan Connelly; Robert Elton Smith; Fernando Calamante (NeuroImage, 2021)

Connectome spatial smoothing (CSS): Concepts, methods, and evaluation. - Sina Mansour L.; Caio Seguin; Robert E. Smith 002; Andrew Zalesky (NeuroImage, 2022)

Quantitative mapping of the brain's structural connectivity using diffusion MRI tractography: A review. - Fan Zhang 013; Alessandro Daducci; Yong He; Simona Schiavi; Caio Seguin; Robert E. Smith 002; Chun-Hung Yeh; Tengda Zhao; Lauren J. O'Donnell (NeuroImage, 2022)

bids-specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2023)

Evaluation of tractogram filtering methods using human-like connectome phantoms. - Tabinda Sarwar; Kotagiri Ramamohanarao; Alessandro Daducci; Simona Schiavi; Robert E. Smith 002; Andrew Zalesky (NeuroImage, 2023)

Connectomes for 40,000 UK Biobank participants: A multi-modal, multi-scale brain network resource. - Sina Mansour L.; Maria Di Biase; Robert E. Smith 002; Andrew Zalesky; Caio Seguin (NeuroImage, 2023)

The Brain Imaging Data Structure (BIDS) Specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2024)