Predicting the in vivo signature of human gene regulatory sequence. - William Stafford Noble; Scott Kuehn; Robert E. Thurman; Man Yu; John A. Stamatoyannopoulos (ISMB (Supplement of Bioinformatics), 2005)

Kernels for gene regulatory regions. - Jean-Philippe Vert; Robert E. Thurman; William Stafford Noble (NIPS, 2005)

Unsupervised segmentation of continuous genomic data. - Nathan Day; Andrew Hemmaplardh; Robert E. Thurman; John A. Stamatoyannopoulos; William Stafford Noble (Bioinform., 2007)

Multi-Scale Correlations in Continuous Genomic Data. - Robert E. Thurman; William Stafford Noble; John A. Stamatoyannopoulos (Pacific Symposium on Biocomputing, 2008)

Automated mapping of large-scale chromatin structure in ENCODE. - Heng Lian; William A. Thompson; Robert E. Thurman; John A. Stamatoyannopoulos; William Stafford Noble; Charles E. Lawrence (Bioinform., 2008)

Predicting Human Nucleosome Occupancy from Primary Sequence. - Shobhit Gupta; Jonathan H. Dennis; Robert E. Thurman; Robert E. Kingston; John A. Stamatoyannopoulos; William Stafford Noble (PLoS Comput. Biol., 2008)

BEDOPS: high-performance genomic feature operations. - Shane J. Neph; Scott Kuehn; Alex P. Reynolds; Eric Haugen; Robert E. Thurman; Audra K. Johnson; Eric Rynes; Matthew T. Maurano; Jeff Vierstra; Sean Thomas; Richard S. Sandstrom; Richard Humbert; et al. (Bioinform., 2012)

Topologically associating domains are stable units of replication-timing regulation Open. - Benjamin D. Pope; Tyrone Ryba; Vishnu Dileep; Feng Yue; Wei-Sheng Wu; Olgert Denas; Daniel L. Vera; Yanli Wang; R. Scott Hansen; Theresa K. Canfield; Robert E. Thurman; Yong Cheng; et al. (Nat., 2014)

Integrative analysis of 111 reference human epigenomes Open. - Roadmap Epigenomics Consortium; Anshul Kundaje; Wouter Meuleman; Jason Ernst; Misha Bilenky; Angela Yen; Alireza Heravi Moussavi; Pouya Kheradpour; ZhiZhuo Zhang; Jianrong Wang; Michael J. Ziller; Viren Amin; et al. (Nat., 2015)

The Xeno Sutra: Can Meaning and Value be Ascribed to an AI-Generated "Sacred" Text? - Murray Shanahan; Tara Das; Robert E. Thurman (CoRR, 2025)