PhyloBLAST: facilitating phylogenetic analysis of BLAST results. - Fiona S. L. Brinkman; Ivan Wan; Robert E. W. Hancock; Ann M. Rose; Steven J. M. Jones (Bioinform., 2001)

ArrayPipe: a flexible processing pipeline for microarray data. - Karsten Hokamp; Fiona M. Roche; Michael Acab; Marc-Etienne Rousseau; Byron Kuo; David L. Goode; Dana Aeschliman; Jenny Bryan; Lorne A. Babiuk; Robert E. W. Hancock; Fiona S. L. Brinkman (Nucleic Acids Res., 2004)

ProbeLynx: a tool for updating the association of microarray probes to genes. - Fiona M. Roche; Karsten Hokamp; Michael Acab; Lorne A. Babiuk; Robert E. W. Hancock; Fiona S. L. Brinkman (Nucleic Acids Res., 2004)

Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation. - Geoffrey L. Winsor; Raymond Lo; Shannan J. Ho Sui; Korine S. E. Ung; Shao-Shan Huang; Dean Cheng; Wai-Kay Ho Ching; Robert E. W. Hancock; Fiona S. L. Brinkman (Nucleic Acids Res., 2005)

Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation. - Aaron Barsky; Jennifer L. Gardy; Robert E. W. Hancock; Tamara Munzner (Bioinform., 2007)

AMPer: a database and an automated discovery tool for antimicrobial peptides. - Christopher D. Fjell; Robert E. W. Hancock; Artem Cherkasov (Bioinform., 2007)

Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. - Geoffrey L. Winsor; Thea Van Rossum; Raymond Lo; Bhavjinder Khaira; Matthew D. Whiteside; Robert E. W. Hancock; Fiona S. L. Brinkman (Nucleic Acids Res., 2009)

Curating the innate immunity interactome. - David J. Lynn; Calvin Chan; Misbah Naseer; Melissa Yau; Raymond Lo; Anastasia Sribnaia; Giselle Ring; Jaimmie Que; Kathleen Wee; Geoffrey L. Winsor; Matthew R. Laird; Karin Breuer; et al. (BMC Syst. Biol., 2010)

Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes. - Geoffrey L. Winsor; David K. W. Lam; Leanne Fleming; Raymond Lo; Matthew D. Whiteside; Nancy Y. Yu; Robert E. W. Hancock; Fiona S. L. Brinkman (Nucleic Acids Res., 2011)

INVEX - a web-based tool for integrative visualization of expression data. - Jianguo Xia; Ngan H. Lyle; Matthew L. Mayer; Olga M. Pena; Robert E. W. Hancock (Bioinform., 2013)

InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. - Karin Breuer; Amir K. Foroushani; Matthew R. Laird; Carol Chen; Anastasia Sribnaia; Raymond Lo; Geoffrey L. Winsor; Robert E. W. Hancock; Fiona S. L. Brinkman; David J. Lynn (Nucleic Acids Res., 2013)

INMEX - a web-based tool for integrative meta-analysis of expression data. - Jianguo Xia; Christopher D. Fjell; Matthew L. Mayer; Olga M. Pena; David S. Wishart; Robert E. W. Hancock (Nucleic Acids Res., 2013)

NetworkAnalyst - integrative approaches for protein-protein interaction network analysis and visual exploration. - Jianguo Xia; Maia J. Benner; Robert E. W. Hancock (Nucleic Acids Res., 2014)

MetaBridge: enabling network-based integrative analysis via direct protein interactors of metabolites. - Samuel J. Hinshaw; Amy H. Y. Lee; Erin E. Gill; Robert E. W. Hancock (Bioinform., 2018)

NetworkAnalyst 3.0: a visual analytics platform for comprehensive gene expression profiling and meta-analysis. - Guangyan Zhou; Othman Soufan; Jessica Ewald; Robert E. W. Hancock; Niladri Basu; Jianguo Xia (Nucleic Acids Res., 2019)

PaIntDB: network-based omics integration and visualization using protein-protein interactions in Pseudomonas aeruginosa. - Javier J. Castillo-Arnemann; Olga Solodova; Bhavjinder K. Dhillon; Robert E. W. Hancock (Bioinform., 2021)

Facilitating pathway and network based analysis of RNA-Seq data with pathlinkR. - Travis M. Blimkie; Andy An; Robert E. W. Hancock (PLoS Comput. Biol., 2024)