The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires. - Milena Pavlovic; Lonneke Scheffer; Keshav Motwani; Chakravarthi Kanduri; Radmila Kompova; Nikolay Vazov; Knut Waagan; Fabian L. M. Bernal; Alexandre Almeida Costa; Brian Corrie; Rahmad Akbar; Ghadi S. Al Hajj; et al. (Nat. Mach. Intell., 2021)

Unconstrained generation of synthetic antibody-antigen structures to guide machine learning methodology for antibody specificity prediction. - Philippe A. Robert; Rahmad Akbar; Robert Frank 006; Milena Pavlovic; Michael Widrich; Igor Snapkov; Andrei Slabodkin; Maria Chernigovskaya; Lonneke Scheffer; Eva Smorodina; Puneet Rawat; Brij Bhushan Mehta; et al. (Nat. Comput. Sci., 2022)

Attribution assignment for deep-generative sequence models enables interpretability analysis using positive-only data. - Robert Frank 006; Michael Widrich; Rahmad Akbar; Günter Klambauer; Geir Kjetil Sandve; Philippe A. Robert; Victor Greiff (CoRR, 2025)