A word-oriented approach to alignment validation. - Robert G. Beiko; Cheong Xin Chan; Mark A. Ragan (Bioinform., 2005)

GANN: Genetic algorithm neural networks for the detection of conserved combinations of features in DNA. - Robert G. Beiko; Robert L. Charlebois (BMC Bioinform., 2005)

Detecting recombination in evolving nucleotide sequences. - Cheong Xin Chan; Robert G. Beiko; Mark A. Ragan (BMC Bioinform., 2006)

A simulation test bed for hypotheses of genome evolution. - Robert G. Beiko; Robert L. Charlebois (Bioinform., 2007)

A two-phase strategy for detecting recombination in nucleotide sequences. - Cheong Xin Chan; Robert G. Beiko; Mark A. Ragan (South Afr. Comput. J., 2007)

Radié: visualizing taxon properties and parsimonious mappings using a radial phylogenetic tree. - Jacqueline L. Whalley; Stephen Brooks; Robert G. Beiko (Bioinform., 2009)

Fast FPT Algorithms for Computing Rooted Agreement Forests: Theory and Experiments. - Chris Whidden; Robert G. Beiko; Norbert Zeh (SEA, 2010)

Efficient learning of microbial genotype-phenotype association rules. - Norman J. MacDonald; Robert G. Beiko (Bioinform., 2010)

Identifying biologically relevant differences between metagenomic communities. - Donovan H. Parks; Robert G. Beiko (Bioinform., 2010)

Classifying short genomic fragments from novel lineages using composition and homology. - Donovan H. Parks; Norman J. MacDonald; Robert G. Beiko (BMC Bioinform., 2011)

Fixed-Parameter and Approximation Algorithms for Maximum Agreement Forests - Chris Whidden; Robert G. Beiko; Norbert Zeh (CoRR, 2011)

SPANNER: taxonomic assignment of sequences using pyramid matching of similarity profiles. - Michael S. Porter; Robert G. Beiko (Bioinform., 2013)

Fixed-Parameter Algorithms for Maximum Agreement Forests. - Chris Whidden; Robert G. Beiko; Norbert Zeh (SIAM J. Comput., 2013)

STAMP: statistical analysis of taxonomic and functional profiles. - Donovan H. Parks; Gene W. Tyson; Philip Hugenholtz; Robert G. Beiko (Bioinform., 2014)

Fixed-Parameter and Approximation Algorithms for Maximum Agreement Forests of Multifurcating Trees. - Chris Whidden; Robert G. Beiko; Norbert Zeh (Algorithmica, 2016)

simDEF: definition-based semantic similarity measure of gene ontology terms for functional similarity analysis of genes. - Ahmad Pesaranghader; Stan Matwin; Marina Sokolova; Robert G. Beiko (Bioinform., 2016)

PSORTm: a bacterial and archaeal protein subcellular localization prediction tool for metagenomics data. - Michael A. Peabody; Wing Yin Venus Lau; Gemma Hoad; Baofeng Jia; Finlay Maguire; Kristen L. Gray; Robert G. Beiko; Fiona S. L. Brinkman (Bioinform., 2020)

CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database. - Brian P. Alcock; Amogelang R. Raphenya; Tammy T. Y. Lau; Kara K. Tsang; Mégane Bouchard; Arman Edalatmand; William Huynh; Anna-Lisa V. Nguyen; Annie A. Cheng; Sihan Liu; Sally Y. Min; Anatoly Miroshnichenko; et al. (Nucleic Acids Res., 2020)

deepSimDEF: deep neural embeddings of gene products and gene ontology terms for functional analysis of genes. - Ahmad Pesaranghader; Stan Matwin; Marina Sokolova; Jean-Christophe Grenier; Robert G. Beiko; Julie Hussin (Bioinform., 2022)

Genome-scale prediction of bacterial promoters. - Miria Bernardino; Robert G. Beiko (Biosyst., 2022)

CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database. - Brian P. Alcock; William Huynh; Romeo Chalil; Keaton W. Smith; Amogelang R. Raphenya; Mateusz A. Wlodarski; Arman Edalatmand; Aaron J. Petkau; Sohaib A. Syed; Kara K. Tsang; Sheridan J. C. Baker; Mugdha Dave; et al. (Nucleic Acids Res., 2023)