Book reviews. - Nozer D. Singpurwalla; Robert Gentleman; Willem J. Heiser; Dibyen Majumdar (Stat. Comput., 1996)

An extensible application for assembling annotation for genomic data. - Jianhua Zhang; Vincent J. Carey; Robert Gentleman (Bioinform., 2003)

A graph-theoretic approach to testing associations between disparate sources of functional genomics data. - Raji Balasubramanian; Thomas LaFramboise; Denise Scholtens; Robert Gentleman (Bioinform., 2004)

matchprobes: a Bioconductor package for the sequence-matching of microarray probe elements. - Wolfgang Huber; Robert Gentleman (Bioinform., 2004)

Network structures and algorithms in Bioconductor. - Vincent J. Carey; Jeff Gentry; Elizabeth Whalen; Robert Gentleman (Bioinform., 2005)

Local modeling of global interactome networks. - Denise Scholtens; Marc Vidal; Robert Gentleman (Bioinform., 2005)

GGtools: analysis of genetics of gene expression in bioconductor. - Vincent J. Carey; Martin Morgan; Seth Falcon; Ross Lazarus; Robert Gentleman (Bioinform., 2007)

Using GOstats to test gene lists for GO term association. - Seth Falcon; Robert Gentleman (Bioinform., 2007)

Extensions to gene set enrichment. - Zhen Jiang; Robert Gentleman (Bioinform., 2007)

Graphs in molecular biology. - Wolfgang Huber; Vincent J. Carey; Li Long; Seth Falcon; Robert Gentleman (BMC Bioinform., 2007)

SGDI: System for Genomic Data Integration. - Vincent J. Carey; Jeff Gentry; Deepayan Sarkar; Robert Gentleman; Srini Ramaswamy (Pacific Symposium on Biocomputing, 2008)

Rintact: enabling computational analysis of molecular interaction data from the IntAct repository. - Tony Chiang; Nianhua Li; Sandra E. Orchard; Samuel Kerrien; Henning Hermjakob; Robert Gentleman; Wolfgang Huber (Bioinform., 2008)

Gene set enrichment analysis using linear models and diagnostics. - Assaf P. Oron; Zhen Jiang; Robert Gentleman (Bioinform., 2008)

Using flowViz to visualize flow cytometry data. - Deepayan Sarkar; Nolwenn Le Meur; Robert Gentleman (Bioinform., 2008)

Estimating node degree in bait-prey graphs. - Denise Scholtens; Tony Chiang; Wolfgang Huber; Robert Gentleman (Bioinform., 2008)

Interpreting Genetics Of Gene Expression: Integrative Architecture In Bioconductor. - Vincent J. Carey; Robert Gentleman (Pacific Symposium on Biocomputing, 2009)

iFlow: A Graphical User Interface for Flow Cytometry Tools in Bioconductor. - Kyongryun Lee; Florian Hahne; Deepayan Sarkar; Robert Gentleman (Adv. Bioinformatics, 2009)

Minimal Covers of Maximal Cliques for Interval Graphs. - Alain C. Vandal; Marston D. E. Conder; Robert Gentleman (Ars Comb., 2009)

DATABASE: A new forum for biological databases and curation. - David Landsman; Robert Gentleman; Janet Kelso; B. F. Francis Ouellette (Database J. Biol. Databases Curation, 2009)

Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.x. - Vincent J. Carey; Adam R. Davis; Michael F. Lawrence; Robert Gentleman; Benjamin A. Raby (Bioinform., 2009)

arrayQualityMetrics - a bioconductor package for quality assessment of microarray data. - Audrey Kauffmann; Robert Gentleman; Wolfgang Huber (Bioinform., 2009)

rtracklayer: an R package for interfacing with genome browsers. - Michael F. Lawrence; Robert Gentleman; Vincent J. Carey (Bioinform., 2009)

ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. - Martin Morgan; Simon Anders; Michael F. Lawrence; Patrick Aboyoun; Hervé Pagès; Robert Gentleman (Bioinform., 2009)

flowCore: a Bioconductor package for high throughput flow cytometry. - Florian Hahne; Nolwenn LeMeur; Ryan Remy Brinkman; Byron Ellis; Perry Haaland; Deepayan Sarkar; Josef Spidlen; Errol Strain; Robert Gentleman (BMC Bioinform., 2009)

Knowledge based identification of essential signaling from genome-scale siRNA experiments. - Armand Bankhead; Iliana Sach; Chester Ni; Nolwenn LeMeur; Mark Kruger; Marc Ferrer; Robert Gentleman; Carol Rohl (BMC Syst. Biol., 2009)

Workshop Introduction. - Michael F. Ochs; Rachel Karchin; Habtom W. Ressom; Robert Gentleman (Pacific Symposium on Biocomputing, 2011)

Towards BioDBcore: a community-defined information specification for biological databases. - Pascale Gaudet; Amos Bairoch; Dawn Field; Susanna-Assunta Sansone; Chris F. Taylor; Teresa K. Attwood; Alex Bateman; Judith A. Blake; Carol J. Bult; J. Michael Cherry; Rex L. Chisholm; Guy Cochrane; et al. (Database J. Biol. Databases Curation, 2011)

R Language. - Robert Gentleman; Wolfgang Huber; Vincent J. Carey (International Encyclopedia of Statistical Science, 2011)

Software for Computing and Annotating Genomic Ranges. - Michael F. Lawrence; Wolfgang Huber; Hervé Pagès; Patrick Aboyoun; Marc Carlson; Robert Gentleman; Martin T. Morgan; Vincent J. Carey (PLoS Comput. Biol., 2013)

Integrative Analysis of Two Cell Lines Derived from a Non-Small-Lung Cancer Patient - A Panomics Approach. - Oleg Mayba; Florian Gnad; Michael Peyton; Fan Zhang 090; Kimberly Walter; Pan Du 006; Melanie A. Huntley; Zhaoshi Jiang; Jinfeng Liu; Peter M. Haverty; Robert Gentleman; Ruiqiang Li; et al. (Pacific Symposium on Biocomputing, 2014)

gCMAP: user-friendly connectivity mapping with R. - Thomas Sandmann; Sarah K. Kummerfeld; Robert Gentleman; Richard Bourgon (Bioinform., 2014)

Discriminative motif analysis of high-throughput dataset. - Zizhen Yao; Kyle L. MacQuarrie; Abraham P. Fong; Stephen J. Tapscott; Walter L. Ruzzo; Robert Gentleman (Bioinform., 2014)

VariantTools: an extensible framework for developing and testing variant callers. - Michael F. Lawrence; Robert Gentleman (Bioinform., 2017)

BioPlexR and BioPlexPy: integrated data products for the analysis of human protein interactions. - Ludwig Geistlinger; Roger Vargas; Tyrone Lee; Joshua Pan; Edward L. Huttlin; Robert Gentleman (Bioinform., 2023)

Implications of mappings between ICD clinical diagnosis codes and Human Phenotype Ontology terms. - Amelia L. M. Tan; Rafael S. Gonçalves 001; William Yuan; Gabriel A. Brat; The Consortium for Clinical Characterization of COVID-19 by EHR; Robert Gentleman; Isaac S. Kohane (CoRR, 2024)

nhanesA: achieving transparency and reproducibility in NHANES research. - Laha Ale; Robert Gentleman; Teresa Filshtein Sonmez; Deepayan Sarkar; Christopher Endres (Database J. Biol. Databases Curation, 2024)

The text2term tool to map free-text descriptions of biomedical terms to ontologies. - Rafael S. Gonçalves 001; Jason Payne; Amelia L. M. Tan; Carmen Benitez; Jamie Haddock; Robert Gentleman (Database J. Biol. Databases Curation, 2024)