Nematode.net: a tool for navigating sequences from parasitic and free-living nematodes. - Todd Wylie; John C. Martin; Michael Dante; Makedonka Dautova Mitreva; Sandra W. Clifton; Asif T. Chinwalla; Robert H. Waterston; Richard K. Wilson; James P. McCarter (Nucleic Acids Res., 2004)

AceTree: a tool for visual analysis of Caenorhabditis elegans embryogenesis. - Thomas J. Boyle; Zhirong Bao; John I. Murray; Carlos L. Araya; Robert H. Waterston (BMC Bioinform., 2006)

Using machine learning to speed up manual image annotation: application to a 3D imaging protocol for measuring single cell gene expression in the developing C. elegans embryo. - Zafer Aydin; John I. Murray; Robert H. Waterston; William Stafford Noble (BMC Bioinform., 2010)

Comparative analysis of regulatory information and circuits across distant species Open. - Alan P. Boyle; Carlos L. Araya; Cathleen Brdlik; Philip Cayting; Chao Cheng; Yong Cheng; Kathryn Gardner; LaDeana W. Hillier; Judith Janette; Lixia Jiang; Dionna Kasper; Trupti Kawli; et al. (Nat., 2014)