PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays. - Michael Beckstette; Dirk Strothmann; Robert Homann; Robert Giegerich; Stefan Kurtz (German Conference on Bioinformatics, 2004)

Fast index based algorithms and software for matching position specific scoring matrices. - Michael Beckstette; Robert Homann; Robert Giegerich; Stefan Kurtz (BMC Bioinform., 2006)

Significant speedup of database searches with HMMs by search space reduction with PSSM family models. - Michael Beckstette; Robert Homann; Robert Giegerich; Stefan Kurtz (Bioinform., 2009)

mkESA: enhanced suffix array construction tool. - Robert Homann; David Fleer; Robert Giegerich; Marc Rehmsmeier (Bioinform., 2009)

Geoseq: a tool for dissecting deep-sequencing datasets. - James Gurtowski; Anthony Cancio; Hardik Shah; Chaya Levovitz; Ajish George; Robert Homann; Ravi Sachidanandam (BMC Bioinform., 2010)