MAPs: a database of modular antibody parts for predicting tertiary structures and designing affinity matured antibodies. - Robert J. Pantazes; Costas D. Maranas (BMC Bioinform., 2013)

The Iterative Protein Redesign and Optimization (IPRO) suite of programs. - Robert J. Pantazes; Matthew J. Grisewood; Tong Li; Nathanael P. Gifford; Costas D. Maranas (J. Comput. Chem., 2015)