BlueSNP: R package for highly scalable genome-wide association studies using Hadoop clusters. - Hailiang Huang; Sandeep Tata; Robert J. Prill (Bioinform., 2013)

DREAMTools: a Python package for scoring collaborative challenges. - Thomas Cokelaer; Mukesh Bansal; Christopher Bare; Erhan Bilal; Brian M. Bot; Elias Chaibub Neto; Federica Eduati; Mehmet Gönen; Steven M. Hill; Bruce R. Hoff; Jonathan R. Karr; Robert Küffner; et al. (F1000Research, 2015)

A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin. - Rob Patro; Raquel Norel; Robert J. Prill; Julio Saez-Rodriguez; Peter Lorenz; Felix Steinbeck; Bjoern Ziems; Mitja Lustrek; Nicola Barbarini; Alessandra Tiengo; Riccardo Bellazzi; Hans-Jürgen Thiesen; et al. (BMC Bioinform., 2016)