A New Fast Heuristic for Computing the Breakpoint Phylogeny and Experimental Phylogenetic Analyses of Real and Synthetic Data. - Mary E. Cosner; Robert K. Jansen; Bernard M. E. Moret; Linda A. Raubeson; Li-San Wang; Tandy J. Warnow; Stacia K. Wyman (ISMB, 2000)

Fast Phylogenetic Methods for the Analysis of Genome Rearrangement Data: An Empirical Study. - Li-San Wang; Robert K. Jansen; Bernard M. E. Moret; Linda A. Raubeson; Tandy J. Warnow (Pacific Symposium on Biocomputing, 2002)

Automatic annotation of organellar genomes with DOGMA. - Stacia K. Wyman; Robert K. Jansen; Jeffrey L. Boore (Bioinform., 2004)

Pattern Identification in Biogeography. - Ganeshkumar Ganapathy; Barbara Goodson; Robert K. Jansen; Vijaya Ramachandran; Tandy J. Warnow (WABI, 2005)

ChloroplastDB: the Chloroplast Genome Database. - Liying Cui; Narayanan Veeraraghavan; Alexander Richter; P. Kerr Wall; Robert K. Jansen; James H. Leebens-Mack; Izabela Makalowska; Claude W. dePamphilis (Nucleic Acids Res., 2006)

Pattern Identification in Biogeography. - Ganeshkumar Ganapathy; Barbara Goodson; Robert K. Jansen; Hai-Son Le; Vijaya Ramachandran; Tandy J. Warnow (IEEE ACM Trans. Comput. Biol. Bioinform., 2006)