MinIONQC: fast and simple quality control for MinION sequencing data. - Robert Lanfear; Miriam Schalamun; David Kainer; Weiwen Wang; Benjamin Schwessinger (Bioinform., 2019)

matOptimize: a parallel tree optimization method enables online phylogenetics for SARS-CoV-2. - Cheng Ye; Bryan Thornlow; Angie S. Hinrichs; Alexander Kramer; Cade Mirchandani; Devika Torvi; Robert Lanfear; Russell Corbett-Detig; Yatish Turakhia (Bioinform., 2022)

Updated site concordance factors minimize effects of homoplasy and taxon sampling. - Yu K. Mo; Robert Lanfear; Matthew W. Hahn; Bui Quang Minh (Bioinform., 2023)

Testing for Phylogenetic Signal in Single-Cell RNA-Seq Data. - Jirí C. Moravec; Robert Lanfear; David L. Spector; Sarah D. Diermeier; Alex Gavryushkin (J. Comput. Biol., 2023)

DecentTree: scalable Neighbour-Joining for the genomic era. - Weiwen Wang; James Barbetti; Thomas Wong; Bryan Thornlow; Russell Corbett-Detig; Yatish Turakhia; Robert Lanfear; Bui Quang Minh (Bioinform., 2023)