OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011. - Robert M. Waterhouse; Evgeny M. Zdobnov; Fredrik Tegenfeldt; Jia Li; Evgenia V. Kriventseva (Nucleic Acids Res., 2011)

OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs. - Robert M. Waterhouse; Fredrik Tegenfeldt; Jia Li; Evgeny M. Zdobnov; Evgenia V. Kriventseva (Nucleic Acids Res., 2013)

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. - Felipe A. Simão; Robert M. Waterhouse; Panagiotis Ioannidis 001; Evgenia V. Kriventseva; Evgeny M. Zdobnov (Bioinform., 2015)

OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software. - Evgenia V. Kriventseva; Fredrik Tegenfeldt; Tom J. Petty; Robert M. Waterhouse; Felipe A. Simão; Igor A. Pozdnyakov; Panagiotis Ioannidis 001; Evgeny M. Zdobnov (Nucleic Acids Res., 2015)

OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs. - Evgeny M. Zdobnov; Fredrik Tegenfeldt; Dmitry Kuznetsov; Robert M. Waterhouse; Felipe A. Simão; Panagiotis Ioannidis 001; Mathieu Seppey; Alexis Loetscher; Evgenia V. Kriventseva (Nucleic Acids Res., 2017)

Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR. - Robert M. Waterhouse; Anne-Françoise Adam-Blondon; Donat Agosti; Petr Baldrian; Bachir Balech; Erwan Le Corre; Robert P. Davey; Henrik Lantz; Graziano Pesole; Christian Quast; Frank Oliver Glöckner; Niels Raes; et al. (F1000Research, 2021)

Summary Visualizations of Gene Ontology Terms With GO-Figure! - Maarten J. M. F. Reijnders; Robert M. Waterhouse (Frontiers Bioinform., 2021)

CrowdGO: Machine learning and semantic similarity guided consensus Gene Ontology annotation. - Maarten J. M. F. Reijnders; Robert M. Waterhouse (PLoS Comput. Biol., 2022)

The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity. - Robert M. Waterhouse; Anne-Françoise Adam-Blondon; Bachir Balech; Endre Barta; Katharina F. Heil; Graham M. Hughes; Lars S. Jermiin; Matús Kalas; Jerry Lanfear; Evangelos Pafilis; Aristotelis C. Papageorgiou; Fotis E. Psomopoulos; et al. (F1000Research, 2023)