Robert A. McDougal

According to our database, Robert A. McDougal authored at least 27 papers between 2013 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

A pipeline for the retrieval and extraction of domain-specific information with application to COVID-19 immune signatures.

Adam J. H. Newton, David Chartash, Steven H. Kleinstein, Robert A. McDougal

BMC Bioinform., December, 2023

Reproducibility of biophysical in silico neuron states and spikes from event-based partial histories.

Evan Cudone, Amelia M. Lower, Robert A. McDougal

PLoS Comput. Biol., October, 2023

Tutorial: using NEURON for neuromechanical simulations.

Chris Fietkiewicz, Robert A. McDougal, David Corrales Marco, Hillel J. Chiel, Peter J. Thomas

Frontiers Comput. Neurosci., September, 2023

2022

BioSimulators: a central registry of simulation engines and services for recommending specific tools.

Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary B. Haiman, Jan Hasenauer, Joseph L. Hellerstein, Henning Hermjakob, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Rahuman S. Malik-Sheriff, Synchon Mandal, Robert A. McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali S. Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David D. van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, James C. Schaff, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr

Nucleic Acids Res., 2022

Efficient Simulation of 3D Reaction-Diffusion in Models of Neurons and Networks.

Robert A. McDougal, Cameron Conte, Lia Eggleston, Adam J. H. Newton, Hana Galijasevic

Frontiers Neuroinformatics, 2022

Modernizing the NEURON Simulator for Sustainability, Portability, and Performance.

Omar Awile, Pramod S. Kumbhar, Nicolas Cornu, Salvador Dura-Bernal, James Gonzalo King, Olli Lupton, Ioannis Magkanaris, Robert A. McDougal, Adam J. H. Newton, Fernando Pereira, Alexandru Savulescu, Nicholas T. Carnevale, William W. Lytton, Michael L. Hines, Felix Schürmann

Frontiers Neuroinformatics, 2022

BioSimulators: a central registry of simulation engines and services for recommending specific tools.

Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary B. Haiman, Joseph L. Hellerstein, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Synchon Mandal, Robert A. McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali S. Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David D. van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr

CoRR, 2022

2020

Editorial: Reproducibility and Rigour in Computational Neuroscience.

Sharon M. Crook, Andrew P. Davison, Robert A. McDougal, Hans Ekkehard Plesser

Frontiers Neuroinformatics, 2020

2019

Parallel Stochastic Discrete Event Simulation of Calcium Dynamics in Neuron.

Mohammad Nazrul Ishlam Patoary, Carl Tropper, Robert A. McDougal, Zhongwei Lin, William W. Lytton

IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Automated Metadata Suggestion During Repository Submission.

Robert A. McDougal, Isha Dalal, Thomas M. Morse, Gordon M. Shepherd

Neuroinformatics, 2019

2018

Using NEURON for Reaction-Diffusion Modeling of Extracellular Dynamics.

Adam J. H. Newton, Robert A. McDougal, Michael L. Hines, William W. Lytton

Frontiers Neuroinformatics, 2018

2017

Multithreaded Stochastic PDES for Reactions and Diffusions in Neurons.

Zhongwei Lin, Carl Tropper, Robert A. McDougal, Mohammand Nazrul Ishlam Patoary, William W. Lytton, Yiping Yao, Michael L. Hines

ACM Trans. Model. Comput. Simul., 2017

Load balancing for multi-threaded PDES of stochastic reaction-diffusion in neurons.

Zhongwei Lin, Carl Tropper, Yiping Yao, Robert A. McDougal, Mohammand Nazrul Ishlam Patoary, William W. Lytton, Michael L. Hines

J. Simulation, 2017

Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience.

Robert A. McDougal, Thomas M. Morse, Ted Carnevale, Luis N. Marenco, Rixin Wang, Michele Migliore, Perry L. Miller, Gordon M. Shepherd, Michael L. Hines

J. Comput. Neurosci., 2017

Optimizations for Neuron Time Warp(NTW) for stochastic reaction-diffusion models of neurons.

Mohammad Nazrul Ishlam Patoary, Carl Tropper, Robert A. McDougal, William W. Lytton

Proceedings of the 2017 Winter Simulation Conference, 2017

2016

Reproducibility in Computational Neuroscience Models and Simulations.

Robert A. McDougal, Anna S. Bulanova, William W. Lytton

IEEE Trans. Biomed. Eng., 2016

Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON.

William W. Lytton, Alexandra Seidenstein, Salvador Dura-Bernal, Robert A. McDougal, Felix Schürmann, Michael L. Hines

Neural Comput., 2016

ORDB, HORDE, ODORactor and other on-line knowledge resources of olfactory receptor-odorant interactions.

Luis N. Marenco, Rixin Wang, Robert A. McDougal, Tsviya Olender, Michal Twik, Elspeth A. Bruford, Xinyi Liu, Jian Zhang, Doron Lancet, Gordon M. Shepherd, Chiquito J. Crasto

Database J. Biol. Databases Curation, 2016

2015

ModelView for ModelDB: Online Presentation of Model Structure.

Robert A. McDougal, Thomas M. Morse, Michael L. Hines, Gordon M. Shepherd

Neuroinformatics, 2015

Neuronal Calcium Wave Propagation Varies with Changes in Endoplasmic Reticulum Parameters: A Computer Model.

Samuel A. Neymotin, Robert A. McDougal, Mohamed A. Sherif, Christopher P. Fall, Michael L. Hines, William W. Lytton

Neural Comput., 2015

3D-printer visualization of neuron models.

Robert A. McDougal, Gordon M. Shepherd

Frontiers Neuroinformatics, 2015

NTW-MT: a Multi-threaded Simulator for Reaction Diffusion Simulations in NEURON.

Zhongwei Lin, Carl Tropper, Mohammand Nazrul Ishlam Patoary, Robert A. McDougal, William W. Lytton, Michael L. Hines

Proceedings of the 3rd ACM Conference on SIGSIM-Principles of Advanced Discrete Simulation, London, United Kingdom, June 10, 2015

2014

SenseLab: Integration of Multidisciplinary Neuroscience Data.

Gordon M. Shepherd, Thomas M. Morse, Luis N. Marenco, Kei-Hoi Cheung, Ted Carnevale, Michele Migliore, Robert A. McDougal, Michael L. Hines, Perry L. Miller

Proceedings of the Encyclopedia of Computational Neuroscience, 2014

ModelDB.

Robert A. McDougal, Rixin Wang, Thomas M. Morse, Michele Migliore, Luis N. Marenco, Ted Carnevale, Michael L. Hines, Gordon M. Shepherd

Proceedings of the Encyclopedia of Computational Neuroscience, 2014

Deterministic Reaction-Diffusion Simulators.

William W. Lytton, Robert A. McDougal

Proceedings of the Encyclopedia of Computational Neuroscience, 2014

Neuron time warp.

Mohammand Nazrul Ishlam Patoary, Carl Tropper, Zhongwei Lin, Robert A. McDougal, William W. Lytton

Proceedings of the 2014 Winter Simulation Conference, 2014

2013

Reaction-diffusion in the NEURON simulator.

Robert A. McDougal, Michael L. Hines, William W. Lytton

Frontiers Neuroinformatics, 2013