Pops: a Computational Tool for Modeling and Predicting Protease Specificity. - Sarah E. Boyd; Robert N. Pike; George B. Rudy; James C. Whisstock; Maria J. García de la Banda (J. Bioinform. Comput. Biol., 2005)

Bioinformatic Approaches for Predicting substrates of Proteases. - Jiangning Song; Hao Tan; Sarah E. Boyd; Hong-Bin Shen; Khalid Mahmood 001; Geoffrey I. Webb; Tatsuya Akutsu; James C. Whisstock; Robert N. Pike (J. Bioinform. Comput. Biol., 2011)

PROSPERous: high-throughput prediction of substrate cleavage sites for 90 proteases with improved accuracy. - Jiangning Song; Fuyi Li; André Leier; Tatiana T. Marquez-Lago; Tatsuya Akutsu; Gholamreza Haffari; Kuo-Chen Chou; Geoffrey I. Webb; Robert N. Pike (Bioinform., 2018)

Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods. - Fuyi Li; Yanan Wang 003; Chen Li 021; Tatiana T. Marquez-Lago; André Leier; Neil D. Rawlings; Gholamreza Haffari; Jerico Nico De Leon Revote; Tatsuya Akutsu; Kuo-Chen Chou; Anthony W. Purcell; Robert N. Pike; et al. (Briefings Bioinform., 2019)