Steady Flow Micro-Reactor Module for Pipelined DNA Computations. - John S. McCaskill; Robert Penchovsky; Marlies Gohlke; Jörg Ackermann; Thomas Rücker (DNA Computing, 2000)

Cascadable Hybridisation Transfer of Specific DNA between Microreactor Selection Modules. - Robert Penchovsky; John S. McCaskill (DNA, 2001)

DNA Library Design for Molecular Computation. - Robert Penchovsky; Jörg Ackermann (J. Comput. Biol., 2003)

EBWS: Essential Bioinformatics Web Services for Sequence Analyses. - Dimitrios Kaloudas; Nikolet Pavlova; Robert Penchovsky (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

ExBWS: extended bioinformatics web services for sequence analyses. - Robert Penchovsky; Nikolet Pavlova; Dimitrios Kaloudas (Int. J. Bioinform. Res. Appl., 2021)

RSwitch: A Novel Bioinformatics Database on Riboswitches as Antibacterial Drug Targets. - Robert Penchovsky; Nikolet Pavlova; Dimitrios Kaloudas (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

An allosteric ribozyme generator and an inverse folding ribozyme generator: Two computer programs for automated computational design of oligonucleotide-sensing allosteric hammerhead ribozymes with YES Boolean logic function based on experimentally validated algorithms. - Dimitrios Kaloudas; Robert Penchovsky (Comput. Biol. Medicine, 2022)