Blue Gene: A vision for protein science using a petaflop supercomputer. - Frances E. Allen; George S. Almási; Wanda Andreoni; Daniel K. Beece; Bruce J. Berne; Arthur A. Bright; José R. Brunheroto; Calin Cascaval; José G. Castaños; Paul Coteus; Paul Crumley; Alessandro Curioni; et al. (IBM Syst. J., 2001)

Blue Gene/L, a System-On-A-Chip. - George S. Almási; Daniel K. Beece; Ralph Bellofatto; Gyan Bhanot; Randy Bickford; Matthias A. Blumrich; Arthur A. Bright; José R. Brunheroto; Calin Cascaval; José G. Castaños; Luis Ceze; Paul Coteus; et al. (CLUSTER, 2002)

An overview of the BlueGene/L Supercomputer. - Narasimha R. Adiga; George Almási 001; George S. Almási; Yariv Aridor; Rajkishore Barik; Daniel K. Beece; Ralph Bellofatto; Gyan Bhanot; Randy Bickford; Matthias A. Blumrich; Arthur A. Bright; José R. Brunheroto; et al. (SC, 2002)

A Volumetric FFT for BlueGene/L. - Maria Eleftheriou; José E. Moreira; Blake G. Fitch; Robert S. Germain (HiPC, 2003)

Blue Matter, an application framework for molecular simulation on Blue Gene. - Blake G. Fitch; Robert S. Germain; Mark P. Mendell; Jed W. Pitera; Michael Pitman; Aleksandr Rayshubskiy; Yuk Yin Sham; Frank Suits; William C. Swope; T. J. Christopher Ward; Yuriy Zhestkov; Ruhong Zhou (J. Parallel Distributed Comput., 2003)

PetaFLOPS computing. - Toshikazu Ebisuzaki; Robert S. Germain; Makoto Taiji (Commun. ACM, 2004)

Blue matter on blue gene/L: massively parallel computation for biomolecular simulation. - Robert S. Germain; Blake G. Fitch; Aleksandr Rayshubskiy; Maria Eleftheriou; Michael Pitman; Frank Suits; Mark Giampapa; T. J. Christopher Ward (CODES+ISSS, 2005)

Early Experience with Scientific Applications on the Blue Gene/L Supercomputer. - George Almási 001; Gyan Bhanot; Dong Chen 005; Maria Eleftheriou; Blake G. Fitch; Alan Gara; Robert S. Germain; John A. Gunnels; Manish Gupta 002; Philip Heidelberger; Michael Pitman; Aleksandr Rayshubskiy; et al. (Euro-Par, 2005)

Performance Measurements of the 3D FFT on the Blue Gene/L Supercomputer. - Maria Eleftheriou; Blake G. Fitch; Aleksandr Rayshubskiy; T. J. Christopher Ward; Robert S. Germain (Euro-Par, 2005)

Scalable framework for 3D FFTs on the Blue Gene/L supercomputer: Implementation and early performance measurements. - Maria Eleftheriou; Blake G. Fitch; Aleksandr Rayshubskiy; T. J. Christopher Ward; Robert S. Germain (IBM J. Res. Dev., 2005)

Custom math functions for molecular dynamics. - Robert F. Enenkel; Blake G. Fitch; Robert S. Germain; Fred G. Gustavson; A. Martin; Mark P. Mendell; Jed W. Pitera; Michael Pitman; Aleksandr Rayshubskiy; Frank Suits; William C. Swope; T. J. Christopher Ward (IBM J. Res. Dev., 2005)

Early performance data on the Blue Matter molecular simulation framework. - Robert S. Germain; Yuriy Zhestkov; Maria Eleftheriou; Aleksandr Rayshubskiy; Frank Suits; T. J. Christopher Ward; Blake G. Fitch (IBM J. Res. Dev., 2005)

Overview of molecular dynamics techniques and early scientific results from the Blue Gene project. - Frank Suits; Michael Pitman; Jed W. Pitera; William C. Swope; Robert S. Germain (IBM J. Res. Dev., 2005)

Progress in Scaling Biomolecular Simulations to Petaflop Scale Platforms. - Blake G. Fitch; Aleksandr Rayshubskiy; Maria Eleftheriou; T. J. Christopher Ward; Mark Giampapa; Michael Pitman; Robert S. Germain (Euro-Par Workshops, 2006)

Blue Matter: Strong Scaling of Molecular Dynamics on Blue Gene/L. - Blake G. Fitch; Aleksandr Rayshubskiy; Maria Eleftheriou; T. J. Christopher Ward; Mark Giampapa; Yuriy Zhestkov; Michael Pitman; Frank Suits; Alan Grossfield; Jed W. Pitera; William C. Swope; Ruhong Zhou; et al. (International Conference on Computational Science (2), 2006)

Parallel implementation of the replica exchange molecular dynamics algorithm on Blue Gene/L. - Maria Eleftheriou; Aleksandr Rayshubskiy; Jed W. Pitera; Blake G. Fitch; Ruhong Zhou; Robert S. Germain (IPDPS, 2006)

Molecular dynamics - Blue matter: approaching the limits of concurrency for classical molecular dynamics. - Blake G. Fitch; Aleksandr Rayshubskiy; Maria Eleftheriou; T. J. Christopher Ward; Mark Giampapa; Michael Pitman; Robert S. Germain (SC, 2006)

A study of the effects of machine geometry and mapping on distributed transpose performance. - Maria Eleftheriou; Blake G. Fitch; Aleksandr Rayshubskiy; T. J. Christopher Ward; Philip Heidelberger; Robert S. Germain (Conf. Computing Frontiers, 2008)

Blue Matter: Scaling of N-body simulations to one atom per node. - Blake G. Fitch; Aleksandr Rayshubskiy; Maria Eleftheriou; T. J. Christopher Ward; Mark Giampapa; Michael Pitman; Jed W. Pitera; William C. Swope; Robert S. Germain (IBM J. Res. Dev., 2008)

Massively parallel molecular dynamics simulations of lysozyme unfolding. - Ruhong Zhou; Maria Eleftheriou; Chung-Chau Hon; Robert S. Germain; Ajay K. Royyuru; Bruce J. Berne (IBM J. Res. Dev., 2008)

Rebasing I/O for Scientific Computing: Leveraging Storage Class Memory in an IBM BlueGene/Q Supercomputer. - Felix Schürmann; Fabien Delalondre; Pramod S. Kumbhar; John Biddiscombe; Miguel Gila; Davide Tacchella; Alessandro Curioni; Bernard Metzler; Peter Morjan; Joachim Fenkes; Michele Franceschini; Robert S. Germain; et al. (ISC, 2014)