Components of the antigen processing and presentation pathway revealed by gene expression microarray analysis following B cell antigen receptor (BCR) stimulation. - Jamie A. Lee; Robert S. Sinkovits; Dennis Mock; Eva L. Rab; Jennifer Cai; Peng Yang; Brian Saunders; Robert C. Hsueh; Sangdun Choi; Shankar Subramaniam; Richard H. Scheuermann (BMC Bioinform., 2006)

Data intensive analysis on the gordon high performance data and compute system. - Robert S. Sinkovits; Pietro Cicotti; Shawn Strande; Mahidhar Tatineni; Paul Rodríguez; Nicole Wolter; Natasha Balac (KDD, 2011)

Subset removal on massive data with Dash. - Jonathan A. Myers; Mahidhar Tatineni; Robert S. Sinkovits (TG, 2011)

Gordon: design, performance, and experiences deploying and supporting a data intensive supercomputer. - Shawn M. Strande; Pietro Cicotti; Robert S. Sinkovits; William S. Young; Rick Wagner; Mahidhar Tatineni; Eva Hocks; Allan Snavely; Mike Norman (XSEDE, 2012)

Network Cosmology - Dmitri V. Krioukov; Maksim Kitsak; Robert S. Sinkovits; David Rideout; David Meyer; Marián Boguñá (CoRR, 2012)

Large Scale predictive analytics for real-time energy management. - Natasha Balac; Tamara B. Sipes; Nicole Wolter; Kenneth Nunes; Robert S. Sinkovits; Homa Karimabadi (IEEE BigData, 2013)

Performance of Applications using Dual-Rail InfiniBand 3D Torus network on the Gordon Supercomputer. - Dong Ju Choi; Glenn K. Lockwood; Robert S. Sinkovits; Mahidhar Tatineni (XSEDE, 2014)

Gateways to Discovery: Cyberinfrastructure for the Long Tail of Science. - Richard Lee Moore; Chaitan Baru; Diane Baxter; Geoffrey Charles Fox; Amitava Majumdar 001; Philip M. Papadopoulos; Wayne Pfeiffer; Robert S. Sinkovits; Shawn Strande; Mahidhar Tatineni; Richard P. Wagner; Nancy Wilkins-Diehr; et al. (XSEDE, 2014)

Fast, Low-Memory Algorithm for Construction of Nanosecond Level Snapshots of Financial Markets. - Robert S. Sinkovits; Tao Feng; Mao Ye (XSEDE, 2014)

Efficient 3D Movement-Based Kernel Density Estimator and Application to Wildlife Ecology. - Jeff A. Tracey; James K. Sheppard; Glenn K. Lockwood; Amit Chourasia; Mahidhar Tatineni; Robert N. Fisher; Robert S. Sinkovits (XSEDE, 2014)

Fast construction of nanosecond level snapshots of financial markets. - Jiading Gai; Dong Ju Choi; David O'Neal; Mao Ye; Robert S. Sinkovits (Concurr. Comput. Pract. Exp., 2014)

FlowGate: towards extensible and scalable web-based flow cytometry data analysis. - Yu Qian; Hyunsoo Kim; Shweta Purawat; Jianwu Wang 001; Rick Stanton; Alexandra Lee; Weijia Xu; Ilkay Altintas; Robert S. Sinkovits; Richard H. Scheuermann (XSEDE, 2015)

Optimization and parallel load balancing of the MPAS Atmosphere Weather and Climate Code. - Robert S. Sinkovits; Michael G. Duda (XSEDE, 2016)

Fast determination of structurally cohesive subgroups in large networks. - Robert S. Sinkovits; James Moody; Bahattin Tolga Öztan; Douglas R. White (J. Comput. Sci., 2016)

Performance Characterization and Optimization Assessment of Bioinformatics Applications. - Pietro Cicotti; Wayne Pfeiffer; Madhu Gujral; Robert S. Sinkovits; Shawn Strande; Ron Hawkins (PEARC, 2017)

Comet: Tales from the Long Tail: Two Years In and 10, 000 Users Later. - Shawn Strande; Haisong Cai; Trevor Cooper; Karen Flammer; Christopher Irving; Gregor von Laszewski; Amitava Majumdar 001; Dmitry Mishin; Philip M. Papadopoulos; Wayne Pfeiffer; Robert S. Sinkovits; Mahidhar Tatineni; et al. (PEARC, 2017)

Deploying Jupyter Notebooks at scale on XSEDE resources for Science Gateways and workshops. - Andrea Zonca; Robert S. Sinkovits (PEARC, 2018)

Deploying Jupyter Notebooks at scale on XSEDE for Science Gateways and workshops. - Andrea Zonca; Robert S. Sinkovits (CoRR, 2018)

Introducing Computing and Technology through Problem-Solving in Discrete Mathematics. - Robert S. Sinkovits; Osvaldo D. Soto (PEARC, 2020)

PyIR: a scalable wrapper for processing billions of immunoglobulin and T cell receptor sequences using IgBLAST. - Cinque S. Soto; Jessica A. Finn; Jordan R. Willis; Samuel B. Day; Robert S. Sinkovits; Taylor Jones; Samuel Schmitz; Jens Meiler; Andre Branchizio; James E. Crowe Jr. (BMC Bioinform., 2020)

Fast and Accurate Determination of Graph Node Connectivity Leveraging Approximate Methods. - Robert S. Sinkovits (ICCS (1), 2021)

Expanse: Computing without Boundaries: Architecture, Deployment, and Early Operations Experiences of a Supercomputer Designed for the Rapid Evolution in Science and Engineering. - Shawn Strande; Haisong Cai; Mahidhar Tatineni; Wayne Pfeiffer; Christopher Irving; Amit Majumdar 001; Dmitry Mishin; Robert S. Sinkovits; Mike Norman; Nicole Wolter; Trevor Cooper; Ilkay Altintas; et al. (PEARC, 2021)

Metrics of financial effectiveness: Return On Investment in XSEDE, a national cyberinfrastructure coordination and support organization. - Craig A. Stewart; Claudia M. Costa; Julie A. Wernert; David Y. Hancock; Donald F. McMullen; Philip D. Blood; Robert S. Sinkovits; Susan Mehringer; Richard Knepper; Jeremy Fischer; Marques Bland; Gary L. Rogers; et al. (PEARC, 2022)

Voyager - An Innovative Computational Resource for Artificial Intelligence & Machine Learning Applications in Science and Engineering. - Rommie E. Amaro; Jiunn-Yeu Chen; Javier M. Duarte; Thomas E. Hutton; Christopher Irving; Martin C. Kandes; Amit Majumdar 001; Dmitry Y. Mishin; Mai H. Nguyen; Paul Rodríguez; Fernando Silva; Robert S. Sinkovits; et al. (PEARC, 2023)

Developing a Best Practices Training Program in Cyberinfrastructure-Enabled Machine Learning Research. - Mary P. Thomas; Andreas W. Götz; Martin C. Kandes; Mai H. Nguyen; Paul Rodríguez; Peter W. Rose; Robert S. Sinkovits (PEARC, 2023)

Use of accounting concepts to study research: return on investment in XSEDE, a US cyberinfrastructure service. - Craig A. Stewart; Claudia M. Costa; Julie A. Wernert; Winona Snapp-Childs; Marques Bland; Philip D. Blood; Terry Campbell; Peter Couvares; Jeremy Fischer; David Y. Hancock; David L. Hart; Harmony Jankowski; et al. (Scientometrics, 2023)

COMPLECS: COMPrehensive Learning for end-users to Effectively utilize CyberinfraStructure. - Robert S. Sinkovits; Nicole Wolter; Marty Charles Kandes; Mary P. Thomas; Monica Sweet (PEARC, 2024)