SWORD - a highly efficient protein database search. - Robert Vaser; Dario Pavlovic; Mile Sikic (Bioinform., 2016)

Trade-offs in Query and Target Indexing for the Selection of Candidates in Protein Homology Searches. - Strahil Ristov; Robert Vaser; Mile Sikic (Stringology, 2017)

Yet another de novo genome assembler. - Robert Vaser; Mile Sikic (ISPA, 2019)

Algorithms for de novo assembly of large genomes. ; Algoritmi za de novo sastavljanje velikih genoma. - Robert Vaser (2019)

Time- and memory-efficient genome assembly with Raven. - Robert Vaser; Mile Sikic (Nat. Comput. Sci., 2021)