Toward an MP Model of Non-Photochemical Quenching. - Vincenzo Manca; Roberto Pagliarini; Simone Zorzan (Workshop on Membrane Computing, 2008)

Regulation and Covering Problems in MP Systems. - Giuditta Franco; Vincenzo Manca; Roberto Pagliarini (Workshop on Membrane Computing, 2009)

An Algorithm for Initial Fluxes of Metabolic P Systems. - Roberto Pagliarini; Giuditta Franco; Vincenzo Manca (Int. J. Comput. Commun. Control, 2009)

A photosynthetic process modelled by a metabolic P system. - Vincenzo Manca; Roberto Pagliarini; Simone Zorzan (Nat. Comput., 2009)

MP Modelling of Glucose-Insulin Interactions in the Intravenous Glucose Tolerance Test. - Vincenzo Manca; Luca Marchetti; Roberto Pagliarini (Int. J. Nat. Comput. Res., 2011)

Data analysis pipeline from laboratory to MP models. - Alberto Castellini; Giuditta Franco; Roberto Pagliarini (Nat. Comput., 2011)

An Analysis of Correlative and Static Causality in P Systems. - Roberto Pagliarini; Oana Agrigoroaiei; Gabriel Ciobanu; Vincenzo Manca (Int. Conf. on Membrane Computing, 2012)

A Genome-Scale Modeling Approach to Study Inborn Errors of Liver Metabolism: Toward an In Silico Patient. - Roberto Pagliarini; Diego di Bernardo (J. Comput. Biol., 2013)

Combining flux balance analysis and model checking for metabolic network validation and analysis. - Roberto Pagliarini; Mara Sangiovanni; Adriano Peron; Diego di Bernardo (Nat. Comput., 2015)

In SILICO Simulations Predict a Causative Link Between Increased Glycolysis and Metabolic Reprogramming in Autosomal Dominant Polycystic Kidney Disease. - Roberto Pagliarini; Alessandra Boletta (CIBCB, 2019)

Reverse Engineering of Renal Tubule Networks in the High-Dimensional Regime. - Roberto Pagliarini (CMSB, 2024)

Towards a Computational Approach to Quantification of Allele Specific Expression at Population Level. - Roberto Pagliarini; Fabio Marroni; Carla Piazza; Giovanni Gabelli; Gabriele Magris; Gabriele Di Gaspero; Michele Morgante; Alberto Policriti (IWBBIO (2), 2024)

Significativity Indices for Agreement Values. - Alberto Casagrande; Francesco Fabris; Rossano Girometti; Roberto Pagliarini (CoRR, 2025)