Preparing Proprietary Systems for Continuous Education e-Learning for Inter-Operability: Exporting to SCORM. - Victor Manso; Roberto Romero; Carlos Palau (ICALT, 2006)

New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate. - Purvesh Khatri; Valmik Desai; Adi L. Tarca; Sivakumar Sellamuthu; Derek E. Wildman; Roberto Romero; Sorin Draghici (Nucleic Acids Res., 2006)

A System Biology Approach for the Steady-State Analysis of Gene Signaling Networks. - Purvesh Khatri; Sorin Draghici; Adi L. Tarca; Sonia S. Hassan; Roberto Romero (CIARP, 2007)

Machine Learning and Its Applications to Biology. - Adi L. Tarca; Vincent J. Carey; Xue-wen Chen 001; Roberto Romero; Sorin Draghici (PLoS Comput. Biol., 2007)

OCPAT: an online codon-preserved alignment tool for evolutionary genomic analysis of protein coding sequences. - Guozhen Liu; Monica Uddin; Munirul Islam; Morris Goodman; Lawrence I. Grossman; Roberto Romero; Derek E. Wildman (Source Code Biol. Medicine, 2007)

KUTE-BASE: storing, downloading and exporting MIAME-compliant microarray experiments in minutes rather than hours. - Sorin Draghici; Adi L. Tarca; Longfei Yu; Stephen Ethier; Roberto Romero (Bioinform., 2008)

A novel signaling pathway impact analysis. - Adi L. Tarca; Sorin Draghici; Purvesh Khatri; Sonia S. Hassan; Pooja Mittal; Jung-Sun Kim; Chong Jai Kim; Juan Pedro Kusanovic; Roberto Romero (Bioinform., 2009)

Varying coefficient model for gene-environment interaction: a non-linear look. - Shujie Ma; Lijian Yang; Roberto Romero; Yuehua Cui (Bioinform., 2011)

A method for analysis and correction of cross-talk effects in pathway analysis. - Michele Donato; Sorin Draghici; Alin Tomoiaga; Peter Westfall; Zhonghui Xu; Roberto Romero (IJCNN, 2012)

Down-weighting overlapping genes improves gene set analysis. - Adi L. Tarca; Sorin Draghici; Gaurav Bhatti; Roberto Romero (BMC Bioinform., 2012)

Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge. - Adi L. Tarca; Mario Lauria; Michael Unger; Erhan Bilal; Stéphanie Boué; Kushal Kumar Dey; Julia Hoeng; Heinz Koeppl; Florian Martin 002; Pablo Meyer 001; Preetam Nandy; Raquel Norel; et al. (Bioinform., 2013)

Z-Bag: a Classification Ensemble System with posterior Probabilistic outputs. - Zhonghui Xu; Calin Voichita; Sorin Draghici; Roberto Romero (Comput. Intell., 2013)

Predicting protein phosphorylation from gene expression: top methods from the IMPROVER Species Translation Challenge. - Adel Dayarian; Roberto Romero; Zhiming Wang; Michael Biehl; Erhan Bilal; Sahand Hormoz; Pablo Meyer 001; Raquel Norel; Kahn Rhrissorrakrai; Gyan Bhanot; Feng Luo 001; Adi L. Tarca (Bioinform., 2015)

Inter-species pathway perturbation prediction via data-driven detection of functional homology. - Christoph Hafemeister; Roberto Romero; Erhan Bilal; Pablo Meyer 001; Raquel Norel; Kahn Rhrissorrakrai; Richard Bonneau; Adi L. Tarca (Bioinform., 2015)

QUEST MRI assessment of fetal brain oxidative stress in utero. - Bruce A. Berkowitz; Roberto Romero; Robert H. Podolsky; Karen M. Lins-Childers; Yimin Shen; Tilman Rosales; Youssef Zaim Wadghiri; Dung Minh Hoang; Marcia Arenas-Hernandez; Valeria Garcia-Flores; George Schwenkel; Bogdan Panaitescu; et al. (NeuroImage, 2019)

Postoperative glioblastoma segmentation: Development of a fully automated pipeline using deep convolutional neural networks and comparison with currently available models. - Santiago Cepeda; Roberto Romero; Daniel García-Pérez; Guillermo Blasco; Luigi Tommaso Luppino; Samuel Kuttner; Ignacio Arrese; Ole Solheim; Live Eikenes; Anna Karlberg; Angel Perez-Nunez; Trinidad Escudero; et al. (CoRR, 2024)

Real-time brain tumor detection in intraoperative ultrasound: From model training to deployment in the operating room. - Santiago Cepeda; Olga Esteban-Sinovas; Roberto Romero; Vikas Singh; Prakash Shetty; Aliasgar Moiyadi; Ilyess Zemmoura; Giuseppe Roberto Giammalva; Massimiliano Del Bene; Arianna Barbotti; Francesco DiMeco; Timothy R. West; et al. (Comput. Biol. Medicine, 2025)

Real-Time Brain Tumor Detection in Intraoperative Ultrasound Using YOLO11: From Model Training to Deployment in the Operating Room. - Santiago Cepeda; Olga Esteban-Sinovas; Roberto Romero; Vikas Singh; Prakash Shetty; Aliasgar Moiyadi; Ilyess Zemmoura; Giuseppe Roberto Giammalva; Massimiliano Del Bene; Arianna Barbotti; Francesco DiMeco; Timothy R. West; et al. (CoRR, 2025)

From Traditional to Cutting-Edge: A Review of Fetal Well-Being Assessment Techniques. - Soongho Park; Thien Nguyen 005; Tony M. George; Otiti A. Mayo; John E. Mutersbaugh; Guoyang Luo; Roberto Romero; Amir H. Gandjbakhche (IEEE Trans. Biomed. Eng., 2025)