TreeMos: a high-throughput phylogenomic approach to find and visualize phylogenetic mosaicism. - Jonathan D. Moore; Robin G. Allaby (Bioinform., 2008)

MCMC-ODPR: Primer design optimization using Markov Chain Monte Carlo sampling. - James L. Kitchen; Jonathan D. Moore; Sarah A. Palmer; Robin G. Allaby (BMC Bioinform., 2012)