Self-Tuning Spectral Clustering for Full-length Viral Quasispecies Reconstruction with PacBio Long Reads. - Xiaoli Jiao; Hiromi Imamichi; Tauseef Rehman; Rishub Nahar; Robin L. Dewar; H. Clifford Lane; Tomozumi Imamichi; Brad T. Sherman (BCB, 2017)

QuasiSeq: profiling viral quasispecies via self-tuning spectral clustering with PacBio long sequencing reads. - Xiaoli Jiao; Hiromi Imamichi; Brad T. Sherman; Rishub Nahar; Robin L. Dewar; H. Clifford Lane; Tomozumi Imamichi; Weizhong Chang (Bioinform., 2022)

HIVGenoPipe: a nextflow pipeline for the detection of HIV-1 drug resistance using a real-time sample-specific reference sequence. - Thoai Dotrang; Brad T. Sherman; Lisheng Dai; Muhammad Ayub Khan; Helene C. Highbarger; Whitney Bruchey; Sylvain Laverdure; Michael W. Baseler; Tomozumi Imamichi; Robin L. Dewar; Weizhong Chang (BMC Bioinform., 2025)