LOMETS2: improved meta-threading server for fold-recognition and structure-based function annotation for distant-homology proteins. - Wei Zheng 013; Chengxin Zhang; Qiqige Wuyun; Robin Pearce; Yang Li 107; Yang Zhang 040 (Nucleic Acids Res., 2019)

Detecting distant-homology protein structures by aligning deep neural-network based contact maps. - Wei Zheng 013; Qiqige Wuyun; Yang Li 107; S. M. Mortuza; Chengxin Zhang; Robin Pearce; Jishou Ruan; Yang Zhang 040 (PLoS Comput. Biol., 2019)

FASPR: an open-source tool for fast and accurate protein side-chain packing. - Xiaoqiang Huang; Robin Pearce; Yang Zhang 040 (Bioinform., 2020)

EvoEF2: accurate and fast energy function for computational protein design. - Xiaoqiang Huang; Robin Pearce; Yang Zhang 040 (Bioinform., 2020)

SSIPe: accurately estimating protein-protein binding affinity change upon mutations using evolutionary profiles in combination with an optimized physical energy function. - Xiaoqiang Huang; Wei Zheng 013; Robin Pearce; Yang Zhang 040 (Bioinform., 2020)

FUpred: detecting protein domains through deep-learning-based contact map prediction. - Wei Zheng 013; Xiaogen Zhou; Qiqige Wuyun; Robin Pearce; Yang Li 107; Yang Zhang 040 (Bioinform., 2020)

Toward the Accuracy and Speed of Protein Side-Chain Packing: A Systematic Study on Rotamer Libraries. - Xiaoqiang Huang; Robin Pearce; Yang Zhang 040 (J. Chem. Inf. Model., 2020)

Fast and accurate Ab Initio Protein structure prediction using deep learning potentials. - Robin Pearce; Yang Li 107; Gilbert S. Omenn; Yang Zhang 040 (PLoS Comput. Biol., 2022)