Towards a Framework for Web Sites Quality Evaluation. - Paolo Ciancarini; Rocco Moretti (SEKE, 2003)

Towards a Metamodeling Based Method for Representing and Selecting Grid Services. - Sergio Andreozzi; Paolo Ciancarini; Danilo Montesi; Rocco Moretti (GSEM, 2004)

Towards a Model for Quality of Web and Grid Services. - Sergio Andreozzi; Danilo Montesi; Paolo Ciancarini; Rocco Moretti (WETICE, 2004)

On the Education of Future Software Engineers. - Andrea Bolognesi; Paolo Ciancarini; Rocco Moretti (Software Education and Training Sessions @ ICSE, 2005)

Towards a Language for a Satisfaction-Based Selection of Grid Services. - Sergio Andreozzi; Paolo Ciancarini; Danilo Montesi; Rocco Moretti (PPAM, 2005)

An OWL-S based approach to express grid services coordination. - Laura Bocchi; Paolo Ciancarini; Rocco Moretti; Valentina Presutti; Davide Rossi (SAC, 2005)

XMatch: A language for satisfaction-based selection of Grid services. - Sergio Andreozzi; Danilo Montesi; Rocco Moretti (Sci. Program., 2005)

Analysis and prototype of a metamodeling environment for engineering grid services. - Rocco Moretti (2005)

An approach to the quantitative evaluation of Grid services. - Sergio Andreozzi; Paolo Ciancarini; Danilo Montesi; Rocco Moretti (Concurr. Comput. Pract. Exp., 2006)

Service oriented software engineering for modeling agents and services in grid systems. - Luca Abeti; Paolo Ciancarini; Rocco Moretti (Multiagent Grid Syst., 2006)

Model Driven Development of Ontology-Based Grid Services. - Luca Abeti; Paolo Ciancarini; Rocco Moretti (WETICE, 2007)

Risk as Dependability Metrics for the Evaluation of Business Solutions: A Model-driven Approach. - Yudistira Asnar; Rocco Moretti; Maurizio Sebastianis; Nicola Zannone (ARES, 2008)

Business Process Modeling for Organizational Knowledge Management. - Luca Abeti; Paolo Ciancarini; Rocco Moretti (Concurrency, Graphs and Models, 2008)

An evaluation of business solutions in manufacturing enterprises. - Yudistira Asnar; Paolo Giorgini; Paolo Ciancarini; Rocco Moretti; Maurizio Sebastianis; Nicola Zannone (Int. J. Bus. Intell. Data Min., 2008)

Implementation and Performance Analysis of XMatch: a Language for Quality-based Selection of Grid Services. - Sergio Andreozzi; Paolo Ciancarini; Danilo Montesi; Rocco Moretti; Silvio Pardi (J. Grid Comput., 2009)

A single stable scheme for steady conjugate heat transfer problems. - Marc-Paul Errera; Rocco Moretti; Rami Salem; Yohann Bachelier; Thomas Arrivé; Minh Nguyen (J. Comput. Phys., 2019)

Foldit Drug Design Game Usability Study: Comparison of Citizen and Expert Scientists. - Yunchao Liu 001; Rocco Moretti; Bobby Bodenheimer; Jens Meiler (MIG, 2020)

Deep Learning for Virtual Screening: Five Reasons to Use ROC Cost Functions. - Vladimir Golkov; Alexander Becker; Daniel T. Plop; Daniel Cuturilo; Neda Davoudi; Jeffrey L. Mendenhall; Rocco Moretti; Jens Meiler; Daniel Cremers (CoRR, 2020)

Better together: Elements of successful scientific software development in a distributed collaborative community. - Julia Koehler Leman; Brian D. Weitzner; P. Douglas Renfrew; Steven M. Lewis; Rocco Moretti; Andrew M. Watkins; Vikram Khipple Mulligan; Sergey Lyskov; Jared Adolf-Bryfogle; Jason W. Labonte; Justyna Krys; RosettaCommons Consortium; et al. (PLoS Comput. Biol., 2020)

Interpretable Chirality-Aware Graph Neural Network for Quantitative Structure Activity Relationship Modeling in Drug Discovery. - Yunchao Liu 001; Yu Wang 160; Oanh Vu; Rocco Moretti; Bobby Bodenheimer; Jens Meiler; Tyler Derr (AAAI, 2023)

WelQrate: Defining the Gold Standard in Small Molecule Drug Discovery Benchmarking. - Yunchao Liu 001; Ha Dong; Xin Wang 061; Rocco Moretti; Yu Wang 160; Zhaoqian Su; Jiawei Gu; Bobby Bodenheimer; Charles David Weaver; Jens Meiler; Tyler Derr (NeurIPS, 2024)

CACHE Challenge #1: Targeting the WDR Domain of LRRK2, A Parkinson's Disease Associated Protein. - Fengling Li; Suzanne Ackloo; Cheryl H. Arrowsmith; Fuqiang Ban; Christopher J. Barden; Hartmut Beck; Jan Beránek; Francois Berenger; Albina Bolotokova; Guillaume Bret; Marko Breznik; Emanuele Carosati; et al. (J. Chem. Inf. Model., 2024)

Recent Advances in Automated Structure-Based De Novo Drug Design. - Yidan Tang; Rocco Moretti; Jens Meiler (J. Chem. Inf. Model., 2024)

Combining machine learning with structure-based protein design to predict and engineer post-translational modifications of proteins. - Moritz Ertelt; Vikram Khipple Mulligan; Jack B. Maguire; Sergey Lyskov; Rocco Moretti; Torben Schiffner; Jens Meiler; Clara T. Schoeder (PLoS Comput. Biol., 2024)

CACHE Challenge #2: Targeting the RNA Site of the SARS-CoV-2 Helicase Nsp13. - Oleksandra Herasymenko; Madhushika Silva; Abd Al-Aziz A. Abu-Saleh; Ayaz Ahmad; Jesus Alvarado-Huayhuaz; Oscar Emilio Arrúa Arce; Roly J. Armstrong; Cheryl H. Arrowsmith; Kelly E. Bachta; Hartmut Beck; Dénes Berta; Mateusz K. Bieniek; et al. (J. Chem. Inf. Model., 2025)

Advancements in Ligand-Based Virtual Screening through the Synergistic Integration of Graph Neural Networks and Expert-Crafted Descriptors. - Yunchao Liu 001; Rocco Moretti; Yu Wang 160; Ha Dong; Bailu Yan; Bobby Bodenheimer; Tyler Derr; Jens Meiler (J. Chem. Inf. Model., 2025)

RosettaAMRLD: A Reaction-Driven Approach for Structure-Based Drug Design from Combinatorial Libraries with Monte Carlo Metropolis Algorithms. - Yidan Tang; Rocco Moretti; Jens Meiler (J. Chem. Inf. Model., 2025)