ViaComplex: software for landscape analysis of gene expression networks in genomic context. - Mauro A. A. Castro; José L. Rybarczyk Filho; Rodrigo J. S. Dalmolin; Marialva Sinigaglia; José C. F. Moreira; José C. M. Mombach; Rita M. C. de Almeida (Bioinform., 2009)

Desenvolvimento de ferramentas de bioinformática para o estudo evolutivo de sistemas bioquímicos - Rodrigo J. S. Dalmolin (2012)

Transcriptogramer: an R/Bioconductor package for transcriptional analysis based on protein-protein interaction. - Diego A. A. Morais; Rita M. C. Almeida; Rodrigo J. S. Dalmolin (Bioinform., 2019)

TreeAndLeaf: an R/Bioconductor package for graphs and trees with focus on the leaves. - Milena A. Cardoso; Luis E. A. Rizzardi; Leonardo W. Kume; Clarice S. Groeneveld; Sheyla Trefflich; Diego A. A. Morais; Rodrigo J. S. Dalmolin; Bruce A. J. Ponder; Kerstin B. Meyer; Mauro A. A. Castro (Bioinform., 2022)

EURYALE: A versatile Nextflow pipeline for taxonomic classification and functional annotation of metagenomics data. - João Vitor Ferreira Cavalcante; Iara Dantas de Souza; Diego A. A. Morais; Rodrigo J. S. Dalmolin (CIBCB, 2024)

easylayout: an R package for interactive force-directed layouts within RStudio. - Danilo Oliveira Imparato; João Vitor Ferreira Cavalcante; Rodrigo J. S. Dalmolin (CoRR, 2024)