QuasiMotiFinder: protein annotation by searching for evolutionarily conserved motif-like patterns. - Roee Gutman; Carine Berezin; Roy Wollman; Yossi Rosenberg; Nir Ben-Tal (Nucleic Acids Res., 2005)

Dissecting the fission yeast regulatory network reveals phase-specific control elements of its cell cycle. - Pierre R. Bushel; Nicholas A. Heard; Roee Gutman; Liwen Liu; Shyamal D. Peddada; Saumyadipta Pyne (BMC Syst. Biol., 2009)

A Bayesian Singular Value Decomposition Procedure for Missing Data Imputation. - Ruoshui Zhai; Roee Gutman (J. Comput. Graph. Stat., 2023)