HeatMapper: powerful combined visualization of gene expression profile correlations, genotypes, phenotypes and sample characteristics. - Roel G. W. Verhaak; Mathijs A. Sanders; Maarten A. Bijl; Ruud Delwel; Sebastiaan Horsman; Michael J. Moorhouse; Peter J. van der Spek; Bob Löwenberg; Peter J. M. Valk (BMC Bioinform., 2006)

The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies. - Roel G. W. Verhaak; Frank J. T. Staal; Peter J. M. Valk; Bob Löwenberg; Marcel J. T. Reinders; Dick de Ridder (BMC Bioinform., 2006)

PRADA: pipeline for RNA sequencing data analysis. - Wandaliz Torres-García; Siyuan Zheng; Andrey Sivachenko; Rahulsimham Vegesna; Qianghu Wang; Rong Yao; Michael F. Berger; John N. Weinstein; Gad Getz; Roel G. W. Verhaak (Bioinform., 2014)

TumorFusions: an integrative resource for cancer-associated transcript fusions. - Xin Hu; Qianghu Wang; Ming Tang; Floris P. Barthel; Samirkumar B. Amin; Kosuke Yoshihara; Frederick M. Lang; Emmanuel Martínez-Ledesma; Soo Hyun Lee; Siyuan Zheng; Roel G. W. Verhaak (Nucleic Acids Res., 2018)

Longitudinal molecular trajectories of diffuse glioma in adults. - Floris P. Barthel; Kevin C. Johnson; Frederick S. Varn; Anzhela D. Moskalik; Georgette Tanner; Emre Kocakavuk; Kevin J. Anderson; Olajide Abiola; Kenneth D. Aldape; Kristin D. Alfaro; Donat Alpar; Samirkumar B. Amin; et al. (Nat., 2019)

Deep learning-based group-wise registration for longitudinal MRI analysis in glioma. - Claudia Chinea Hammecher; Karin van Garderen; Marion Smits; Pieter Wesseling; Bart A. Westerman; Pim J. French; Mathilde C. M. Kouwenhoven; Roel G. W. Verhaak; Frans Vos; Esther Bron; Bo Li 088 (CoRR, 2023)