Iterative weighting of phylogenetic profiles increases classification accuracy. - Roger A. Craig; Li Liao (ICMLA, 2005)

Prediction of Antisense Oligonucleotide Efficacy Using Local and Global Structure Information with Support Vector Machines. - Roger A. Craig; Li Liao (ICMLA, 2006)

Protein classification using transductive learning on phylogenetic profiles. - Roger A. Craig; Li Liao (SAC, 2006)

Phylogenetic tree information aids supervised learning for predicting protein-protein interaction based on distance matrices. - Roger A. Craig; Li Liao (BMC Bioinform., 2007)

Transductive learning with EM algorithm to classify proteins based on phylogenetic profiles. - Roger A. Craig; Li Liao (Int. J. Data Min. Bioinform., 2007)

Inferring functional linkage from residue level co-evolution information. - Roger A. Craig; Keyur Malaviya; Krishna Balasubramanian; Li Liao (BIOCOMP, 2008)