Evaluation of Quantitative Structure-Activity Relationship Methods for Large-Scale Prediction of Chemicals Binding to the Estrogen Receptor. - Weida Tong; David R. Lowis; Roger Perkins; Yu Chen; William J. Welsh; Dean W. Goddette; Trevor W. Heritage; Daniel M. Sheehan (J. Chem. Inf. Comput. Sci., 1998)

QSAR Models Using a Large Diverse Set of Estrogens. - Leming M. Shi; Hong Fang; Weida Tong; Jie Wu 008; Roger Perkins; Robert M. Blair; William S. Branham; Stacey L. Dial; Carrie L. Moland; Daniel M. Sheehan (J. Chem. Inf. Comput. Sci., 2001)

Decision Forest: Combining the Predictions of Multiple Independent Decision Tree Models. - Weida Tong; Huixiao Hong; Hong Fang; Qian Xie 004; Roger Perkins (J. Chem. Inf. Comput. Sci., 2003)

Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling. - Hong Fang; Weida Tong; Roger Perkins; Leming M. Shi; Huixiao Hong; X. Cao; Qian Xie 004; S. H. Yim; J. M. Ward; Henry C. Pitot; Yvonne P. Dragan (BMC Bioinform., 2005)

Quality control and quality assessment of data from surface-enhanced laser desorption/ionization (SELDI) time-of flight (TOF) mass spectrometry (MS). - Huixiao Hong; Yvonne P. Dragan; Joshua Epstein; Candee Teitel; Bangzheng Chen; Qian Xie 004; Hong Fang; Leming M. Shi; Roger Perkins; Weida Tong (BMC Bioinform., 2005)

Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential. - Leming M. Shi; Weida Tong; Hong Fang; Uwe Scherf; Jing Han 003; Raj K. Puri; Felix W. Frueh; Federico M. Goodsaid; Lei Guo 006; Zhenqiang Su; Tao Han 007; James C. Fuscoe; et al. (BMC Bioinform., 2005)

Microarray scanner calibration curves: characteristics and implications. - Leming M. Shi; Weida Tong; Zhenqiang Su; Tao Han 007; Jing Han 003; Raj K. Puri; Hong Fang; Felix W. Frueh; Federico M. Goodsaid; Lei Guo 006; William S. Branham; James J. Chen; et al. (BMC Bioinform., 2005)

Decision Forest Analysis of 61 Single Nucleotide Polymorphisms in a Case-Control Study of Esophageal Cancer; a novel method. - Qian Xie 004; Luke D. Ratnasinghe; Huixiao Hong; Roger Perkins; Ze-Zhong Tang; Nan Hu; Philip R. Taylor; Weida Tong (BMC Bioinform., 2005)

GOFFA: Gene Ontology For Functional Analysis - A FDA Gene Ontology Tool for Analysis of Genomic and Proteomic Data. - Hongmei Sun; Hong Fang; Tao Chen; Roger Perkins; Weida Tong (BMC Bioinform., 2006)

Consensus analysis of multiple classifiers using non-repetitive variables: Diagnostic application to microarray gene expression data. - Zhenqiang Su; Huixiao Hong; Roger Perkins; Xueguang Shao; Wensheng Cai; Weida Tong (Comput. Biol. Chem., 2007)

Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples. - Huixiao Hong; Zhenqiang Su; Weigong Ge; Leming M. Shi; Roger Perkins; Hong Fang; Joshua Xu; James J. Chen; Tao Han 007; Jim Kaput; James C. Fuscoe; Weida Tong (BMC Bioinform., 2008)

The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies. - Leming M. Shi; Wendell D. Jones; Roderick V. Jensen; Stephen C. Harris; Roger Perkins; Federico M. Goodsaid; Lei Guo 006; Lisa J. Croner; Cecilie Boysen; Hong Fang; Feng Qian; Shashi Amur; et al. (BMC Bioinform., 2008)

Very Important Pool (VIP) genes - an application for microarray-based molecular signatures. - Zhenqiang Su; Huixiao Hong; Hong Fang; Leming M. Shi; Roger Perkins; Weida Tong (BMC Bioinform., 2008)

Mold2, Molecular Descriptors from 2D Structures for Chemoinformatics and Toxicoinformatics. - Huixiao Hong; Qian Xie 004; Weigong Ge; Feng Qian; Hong Fang; Leming Shi; Zhenqiang Su; Roger Perkins; Weida Tong (J. Chem. Inf. Model., 2008)

The Accurate Prediction of Protein Family from Amino Acid Sequence by Measuring Features of Sequence Fragments. - Huixiao Hong; Qilong Hong; Roger Perkins; Leming M. Shi; Hong Fang; Zhenqiang Su; Yvonne P. Dragan; James C. Fuscoe; Weida Tong (J. Comput. Biol., 2009)

The EDKB: an established knowledge base for endocrine disrupting chemicals. - Don Ding; Lei Xu; Hong Fang; Huixiao Hong; Roger Perkins; Steve Harris; Edward D. Bearden; Leming Shi; Weida Tong (BMC Bioinform., 2010)

Selecting a single model or combining multiple models for microarray-based classifier development? - A comparative analysis based on large and diverse datasets generated from the MAQC-II project. - Minjun Chen; Leming M. Shi; Reagan Kelly; Roger Perkins; Hong Fang; Weida Tong (BMC Bioinform., 2011)

Homology modeling, molecular docking, and molecular dynamics simulations elucidated α-fetoprotein binding modes. - Jie Shen; Wenqian Zhang; Hong Fang; Roger Perkins; Weida Tong; Huixiao Hong (BMC Bioinform., 2013)

Competitive molecular docking approach for predicting estrogen receptor subtype α agonists and antagonists. - Hui Wen Ng; Wenqian Zhang; Mao Shu; Heng Luo 002; Weigong Ge; Roger Perkins; Weida Tong; Huixiao Hong (BMC Bioinform., 2014)

Whole genome sequencing of 35 individuals provides insights into the genetic architecture of Korean population. - Wenqian Zhang; Joe Meehan; Zhenqiang Su; Hui Wen Ng; Mao Shu; Heng Luo 002; Weigong Ge; Roger Perkins; Weida Tong; Huixiao Hong (BMC Bioinform., 2014)

A heuristic approach to determine an appropriate number of topics in topic modeling. - Weizhong Zhao; James J. Chen; Roger Perkins; Zhichao Liu; Weigong Ge; Yijun Ding; Wen Zou (BMC Bioinform., 2015)

A novel procedure on next generation sequencing data analysis using text mining algorithm. - Weizhong Zhao; James J. Chen; Roger Perkins; Yuping Wang; Zhichao Liu; Huixiao Hong; Weida Tong; Wen Zou (BMC Bioinform., 2016)

Erratum to: A novel procedure on next generation sequencing data analysis using text mining algorithm. - Weizhong Zhao; James J. Chen; Roger Perkins; Yuping Wang; Zhichao Liu; Huixiao Hong; Weida Tong; Wen Zou (BMC Bioinform., 2016)

Best Setting of Model Parameters in Applying Topic Modeling on Textual Documents. - Wen Zou; Weizhong Zhao; James J. Chen; Roger Perkins (BCB, 2017)

Text Fingerprinting and Topic Mining in the Prescription Opioid Use Literature. - Huyen Le; Junxiu Zhou; Weizhong Zhao; Roger Perkins; Weigong Ge; Beverly Lyn-Cook; Henry Francis; Huixiao Hong; Weida Tong; Wen Zou (BIBM, 2021)