Sequential Diagonal Linear Discriminant Analysis (SeqDLDA) for Microarray Classification and Gene Identification. - Roger Pique-Regi; Antonio Ortega; Shahab Asgharzadeh (CSB Workshops, 2005)

Block Diagonal Linear Discriminant Analysis with Sequential Embedded Feature Selection. - Roger Pique-Regi; Antonio Ortega (ICASSP (5), 2006)

Wavelet Footprints and Sparse Bayesian Learning for DNA Copy Number Change Analysis. - Roger Pique-Regi; En-Shuo Tsau; Antonio Ortega; Robert C. Seeger; Shahab Asgharzadeh (ICASSP (1), 2007)

Sparse representation and Bayesian detection of genome copy number alterations from microarray data. - Roger Pique-Regi; Jordi Monso-Varona; Antonio Ortega; Robert C. Seeger; Timothy Triche; Shahab Asgharzadeh (Bioinform., 2008)

Treelets as feature transformation tool for block diagonal linear discrimination. - Lingyan Sheng; Antonio Ortega; Roger Pique-Regi; Shahab Asgharzadeh (GENSiPS, 2009)

Microarray classification using block diagonal linear discriminant analysis with embedded feature selection. - Lingyan Sheng; Roger Pique-Regi; Shahab Asgharzadeh; Antonio Ortega (ICASSP, 2009)

Joint estimation of copy number variation and reference intensities on multiple DNA arrays using GADA. - Roger Pique-Regi; Antonio Ortega; Shahab Asgharzadeh (Bioinform., 2009)

R-Gada: a fast and flexible pipeline for copy number analysis in association studies. - Roger Pique-Regi; Alejandro Cáceres; Juan R. González (BMC Bioinform., 2010)

A fast and accurate method to detect allelic genomic imbalances underlying mosaic rearrangements using SNP array data. - Juan R. González; Benjamin Rodriguez-Santiago; Alejandro Cáceres; Roger Pique-Regi; Nathaniel Rothman; Stephen J. Chanock; Lluís Armengol; Luis A. Pérez-Jurado (BMC Bioinform., 2011)

Copy number variation signature to predict human ancestry. - Melissa Pronold; Marzieh Vali; Roger Pique-Regi; Shahab Asgharzadeh (BMC Bioinform., 2012)

Detecting Changes in DNA Copy Number: Reviewing signal processing techniques. - Roger Pique-Regi; Antonio Ortega; Ahmed H. Tewfik; Shahab Asgharzadeh (IEEE Signal Process. Mag., 2012)

QuASAR: quantitative allele-specific analysis of reads. - Chris T. Harvey; Gregory A. Moyerbrailean; Gordon O. Davis; Xiaoquan Wen; Francesca Luca; Roger Pique-Regi (Bioinform., 2015)

QuASAR-MPRA: accurate allele-specific analysis for massively parallel reporter assays. - Cynthia A. Kalita; Gregory A. Moyerbrailean; Christopher Brown; Xiaoquan Wen; Francesca Luca; Roger Pique-Regi (Bioinform., 2018)

BAGSE: a Bayesian hierarchical model approach for gene set enrichment analysis. - Abhay Hukku; Corbin Quick; Francesca Luca; Roger Pique-Regi; Xiaoquan Wen (Bioinform., 2020)