Benchmarking the empirical accuracy of short-read sequencing across the M. tuberculosis genome. - Maximillian G. Marin; Roger Vargas; Michael Harris; Brendan Jeffrey; L. Elaine Epperson; David Durbin; Michael Strong; Max Salfinger; Zamin Iqbal; Irada Akhundova; Sergo Vashakidze; Valeriu Crudu; et al. (Bioinform., 2022)

Gene signature discovery and systematic validation across diverse clinical cohorts for TB prognosis and response to treatment. - Roger Vargas; Liam Abbott; Daniel Bower; Nicole Frahm; Mike Shaffer; Wen-Han Yu (PLoS Comput. Biol., 2023)

BioPlexR and BioPlexPy: integrated data products for the analysis of human protein interactions. - Ludwig Geistlinger; Roger Vargas; Tyrone Lee; Joshua Pan; Edward L. Huttlin; Robert Gentleman (Bioinform., 2023)