MetaAll: integrative bioinformatics workflow for analysing clinical metagenomic data. - Martin Bosilj; Alen Suljic; Samo Zakotnik; Jan Slunecko; Rok Kogoj; Misa Korva (Briefings Bioinform., 2024)

Efficient SARS-CoV-2 variant detection and monitoring with Spike Screen next-generation sequencing. - Alen Suljic; Tomaz Mark Zorec; Samo Zakotnik; Doroteja Vlaj; Rok Kogoj; Natasa Knap; Miroslav Petrovec; Mario Poljak; Tatjana Avsic-Zupanc; Misa Korva (Briefings Bioinform., 2024)

Bioinformatic challenges in metagenomic next generation sequencing data analysis while unravelling a case of uncommon campylobacteriosis. - Rok Kogoj; Martin Bosilj; Andraz Celar Sturm; Misa Korva; Katja Strasek Smrdel; Eva Kvas; Mateja Pirs; Lidija Lepen; Tina Triglav (J. Biomed. Informatics, 2025)