MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genome. - Heiko Schoof; Paolo Zaccaria; Heidrun Gundlach; Kai Lemcke; Stephen Rudd; Grigory Kolesov; Roland Arnold; Hans-Werner Mewes; Klaus F. X. Mayer (Nucleic Acids Res., 2002)

MIPS: analysis and annotation of proteins from whole genomes. - Hans-Werner Mewes; Clara Amid; Roland Arnold; Dmitrij Frishman; Ulrich Güldener; Gertrud Mannhaupt; Martin Münsterkötter; Philipp Pagel; Normann Strack; Volker Stümpflen; Jens Warfsmann; Andreas Ruepp (Nucleic Acids Res., 2004)

SIMAP - The similarity matrix of proteins. - Roland Arnold; Thomas Rattei; Patrick Tischler; Minh-Duc Truong; Volker Stümpflen; Hans-Werner Mewes (ECCB/JBI, 2005)

Using Public Resource Computing and Systematic Pre-calculation for Large Scale Sequence Analysis. - Thomas Rattei; Mathias C. Walter; Roland Arnold; David P. Anderson; Hans-Werner Mewes (GCCB, 2006)

SIMAP: the similarity matrix of proteins. - Thomas Rattei; Roland Arnold; Patrick Tischler; Dominik Lindner; Volker Stümpflen; Hans-Werner Mewes (Nucleic Acids Res., 2006)

Gepard: a rapid and sensitive tool for creating dotplots on genome scale. - Jan Krumsiek; Roland Arnold; Thomas Rattei (Bioinform., 2007)

SIMAP - structuring the network of protein similarities. - Thomas Rattei; Patrick Tischler; Roland Arnold; Franz Hamberger; Jörg Krebs; Jan Krumsiek; Benedikt Wachinger; Volker Stümpflen; Hans-Werner Mewes (Nucleic Acids Res., 2008)

PEDANT covers all complete RefSeq genomes. - Mathias C. Walter; Thomas Rattei; Roland Arnold; Ulrich Güldener; Martin Münsterkötter; Karamfilka Nenova; Gabi Kastenmüller; Patrick Tischler; Andreas Wölling; Andreas Volz; Norbert Pongratz; Ralf Jost; et al. (Nucleic Acids Res., 2009)

SIMAP - a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters. - Thomas Rattei; Patrick Tischler; Stefan Götz 003; Marc-André Jehl; Jonathan Hoser; Roland Arnold; Ana Conesa; Hans-Werner Mewes (Nucleic Acids Res., 2010)

Development of computational models of the chlamydial interactomes and of bacterial secreted proteins (Computergestützte Modelle der Chlamydieninteraktome und bakterieller Sekretion) - Roland Arnold (2010)

B2G-FAR, a species-centered GO annotation repository. - Stefan Götz 003; Roland Arnold; Patricia Sebastián-León; Samuel Martín-Rodríguez; Patrick Tischler; Marc-André Jehl; Joaquín Dopazo; Thomas Rattei; Ana Conesa (Bioinform., 2011)

Effective - a database of predicted secreted bacterial proteins. - Marc-André Jehl; Roland Arnold; Thomas Rattei (Nucleic Acids Res., 2011)

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges. - Sean Powell; Damian Szklarczyk; Kalliopi Trachana; Alexander Roth 001; Michael Kuhn 004; Jean Muller; Roland Arnold; Thomas Rattei; Ivica Letunic; Tobias Doerks; Lars Juhl Jensen; Christian von Mering; et al. (Nucleic Acids Res., 2012)

SIMAP - the database of all-against-all protein sequence similarities and annotations with new interfaces and increased coverage. - Roland Arnold; Florian Goldenberg; Hans-Werner Mewes; Thomas Rattei (Nucleic Acids Res., 2014)

Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in Escherichia coli. - James Vlasblom; Khalid Zuberi; Harold Rodriguez; Roland Arnold; Alla Gagarinova; Viktor Deineko; Ashwani Kumar; Elisa Leung; Kamran Rizzolo; Bahram Samanfar; Luke Chang; Sadhna Phanse; et al. (Bioinform., 2015)

PAT: predictor for structured units and its application for the optimization of target molecules for the generation of synthetic antibodies. - Jouhyun Jeon; Roland Arnold; Fateh Singh; Joan Teyra; Tatjana Braun; Philip M. Kim (BMC Bioinform., 2016)

EffectiveDB - updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems. - Valerie Eichinger; Thomas Nussbaumer; Alexander Platzer; Marc-André Jehl; Roland Arnold; Thomas Rattei (Nucleic Acids Res., 2016)