YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities. - Roland Schwarz 002; Patrick Musch; Axel von Kamp; Bernd Engels; R. Heiner Schirmer; Stefan Schuster; Thomas Dandekar (BMC Bioinform., 2005)

Integrated network reconstruction, visualization and analysis using YANAsquare. - Roland Schwarz 002; Chunguang Liang; Christoph Kaleta; Mark Kühnel; Eik Hoffmann; Sergei Kuznetsov; Michael Hecker; Gareth Griffiths 003; Stefan Schuster; Thomas Dandekar (BMC Bioinform., 2007)

Modelling phagosomal lipid networks that regulate actin assembly. - Mark Kühnel; Luis S. Mayorga; Thomas Dandekar; Juilee Thakar; Roland Schwarz 002; Elsa Anes; Gareth Griffiths 003; Jens G. Reich (BMC Syst. Biol., 2008)

The ITS2 Database III - sequences and structures for phylogeny. - Christian Koetschan; Frank Förster; Alexander Keller 006; Tina Schleicher; Benjamin Ruderisch; Roland Schwarz 002; Tobias Müller 001; Matthias Wolf 002; Jörg Schultz (Nucleic Acids Res., 2010)

Phylogenetic Quantification of Intra-tumour Heterogeneity. - Roland F. Schwarz; Anne Trinh; Botond Sipos; James D. Brenton; Nick Goldman; Florian Markowetz (PLoS Comput. Biol., 2014)

Changes in Postural Syntax Characterize Sensory Modulation and Natural Variation of C. elegans Locomotion. - Roland F. Schwarz; Robyn Branicky; Laura J. Grundy; William R. Schafer; André E. X. Brown (PLoS Comput. Biol., 2015)

Genomic basis for RNA alterations in cancer. - Claudia Calabrese; Natalie R. Davidson; Deniz Demircioglu; Nuno A. Fonseca; Yao He; André Kahles; Kjong-Van Lehmann; Fenglin Liu; Yuichi Shiraishi; Cameron M. Soulette; Lara Urban; Liliana Greger; et al. (Nat., 2020)

GAMIBHEAR: whole-genome haplotype reconstruction from Genome Architecture Mapping data. - Julia Markowski; Rieke Kempfer; Alexander Kukalev; Ibai Irastorza-Azcarate; Gesa Loof; Birte Kehr; Ana Pombo; Sven Rahmann; Roland F. Schwarz (Bioinform., 2021)

SMITH: spatially constrained stochastic model for simulation of intra-tumour heterogeneity. - Adam Streck; Tom L. Kaufmann; Roland F. Schwarz (Bioinform., 2023)

Refphase: Multi-sample phasing reveals haplotype-specific copy number heterogeneity. - Thomas B. K. Watkins; Emma C. Colliver; Matthew R. Huska; Tom L. Kaufmann; Emilia L. Lim; Cody B. Duncan; Kerstin Haase; Peter Van Loo; Charles Swanton; Nicholas McGranahan; Roland F. Schwarz (PLoS Comput. Biol., 2023)