A Unified Approach for Reconstructing Ancient Gene Clusters. - Jens Stoye; Roland Wittler (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

Consistency of Sequence-Based Gene Clusters. - Roland Wittler; Jens Stoye (RECOMB-CG, 2010)

Tractability Results for the Consecutive-Ones Property with Multiplicity. - Cédric Chauve; Ján Manuch; Murray Patterson; Roland Wittler (CPM, 2011)

Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes. - Roland Wittler; Cédric Chauve (BMC Bioinform., 2011)

Consistency of Sequence-Based Gene Clusters. - Roland Wittler; Ján Manuch; Murray Patterson; Jens Stoye (J. Comput. Biol., 2011)

Linearization of ancestral multichromosomal genomes. - Ján Manuch; Murray Patterson; Roland Wittler; Cédric Chauve; Eric Tannier (BMC Bioinform., 2012)

The Potential of Family-Free Genome Comparison. - Marília D. V. Braga; Cédric Chauve; Daniel Doerr; Katharina Jahn 001; Jens Stoye; Annelyse Thévenin; Roland Wittler (Models and Algorithms for Genome Evolution, 2013)

Unraveling overlapping deletions by agglomerative clustering. - Roland Wittler (BMC Genom., 2013)

Correction: Unraveling overlapping deletions by agglomerative clustering. - Roland Wittler (BMC Genom., 2013)

Bloom Filter Trie - A Data Structure for Pan-Genome Storage. - Guillaume Holley; Roland Wittler; Jens Stoye (WABI, 2015)

Repeat- and error-aware comparison of deletions. - Roland Wittler; Tobias Marschall; Alexander Schönhuth; Veli Mäkinen (Bioinform., 2015)

The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. - Nina Luhmann; Annelyse Thévenin; Aïda Ouangraoua; Roland Wittler; Cédric Chauve (ISBRA, 2016)

Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage. - Guillaume Holley; Roland Wittler; Jens Stoye (Algorithms Mol. Biol., 2016)

The SCJ small parsimony problem for weighted gene adjacencies (Extended version). - Nina Luhmann; Annelyse Thévenin; Aïda Ouangraoua; Roland Wittler; Cédric Chauve (CoRR, 2016)

Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings. - Luís Felipe I. Cunha; Simone Dantas; Travis Gagie; Roland Wittler; Luis A. B. Kowada; Jens Stoye (CPM, 2017)

Fast and Simple Jumbled Indexing for Binary RLE Strings. - Luís Felipe I. Cunha; Simone Dantas; Travis Gagie; Roland Wittler; Luis A. B. Kowada; Jens Stoye (CoRR, 2017)

Dynamic Alignment-Free and Reference-Free Read Compression. - Guillaume Holley; Roland Wittler; Jens Stoye; Faraz Hach (J. Comput. Biol., 2018)

Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. - Nina Luhmann; Cédric Chauve; Jens Stoye; Roland Wittler (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. - Nina Luhmann; Manuel Lafond; Annelyse Thévenin; Aïda Ouangraoua; Roland Wittler; Cédric Chauve (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

Alignment- and reference-free phylogenomics with colored de Bruijn graphs. - Roland Wittler (Algorithms Mol. Biol., 2020)

SANS serif: alignment-free, whole-genome-based phylogenetic reconstruction. - Andreas Rempel; Roland Wittler (Bioinform., 2021)

Detecting high-scoring local alignments in pangenome graphs. - Tizian Schulz; Roland Wittler; Sven Rahmann; Faraz Hach; Jens Stoye (Bioinform., 2021)