New Developments in Linking of Biological Databases and Computer-Generation of Annotations: SWISS-PROT and Its Computer-Annotated Supplement TREMBL. - Rolf Apweiler; Vivien Junker; Alain Gateau; Claire O'Donovan; Fiona Lang; Amos Bairoch (German Conference on Bioinformatics - Selected Papers, 1996)

New Developments in the Linking of Biological Databases and Computer-Generation of Annotation. - Rolf Apweiler; Vivien Junker; Alain Gateau; Claire O'Donovan; Fiona Lang; Amos Bairoch (German Conference on Bioinformatics, 1996)

The SWISS-PROT protein sequence data bank and its new supplement TREMBL. - Amos Bairoch; Rolf Apweiler (Nucleic Acids Res., 1996)

Protein Sequence Annotation in the Genome Era: The Annotation Concept of SWISS-PROT + TREMBL. - Rolf Apweiler; Alain Gateau; Sergio Contrino; Maria Jesus Martin; Vivien Junker; Claire O'Donovan; Fiona Lang; Nicoletta Mitaritonna; Stephanie Kappus; Amos Bairoch (ISMB, 1997)

The SWISS-PROT protein sequence data bank and its supplement TrEMBL. - Amos Bairoch; Rolf Apweiler (Nucleic Acids Res., 1997)

A novel method for automatic and reliable functional annotation of proteins. - Wolfgang Fleischmann; Steffen Möller; Alain Gateau; Rolf Apweiler (German Conference on Bioinformatics, 1998)

SPTR: A comprehensive, non redundant and up-to-date view of the protein sequence world. - Henning Hermjakob; Claire O'Donovan; Maria Jesus Martin; Fiona Lang; Rolf Apweiler (German Conference on Bioinformatics, 1998)

The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998. - Amos Bairoch; Rolf Apweiler (Nucleic Acids Res., 1998)

Facilitating context-sensitive queries: A tool to rephrase SWISS-PROT. - Steffen Möller; Michael J. Wise; David P. Kreil; Michael Schroeder 001; D. Gilbest; Rolf Apweiler (German Conference on Bioinformatics, 1999)

Feature Propagation - Semi Automatic transfer of position dependent SWISS-PROT annotation. - Arno Velds; Henning Hermjakob; Rolf Apweiler (German Conference on Bioinformatics, 1999)

A novel method for automatic functional annotation of proteins. - Wolfgang Fleischmann; Steffen Möller; Alain Gateau; Rolf Apweiler (Bioinform., 1999)

Swissknife - 'lazy parsing' of SWISS-PROT entries. - Henning Hermjakob; Wolfgang Fleischmann; Rolf Apweiler (Bioinform., 1999)

Representation of functional information in the SWISS-PROT Data Bank. - Vivien L. Junker; Rolf Apweiler; Amos Bairoch (Bioinform., 1999)

EDITtoTrEMBL: a distributed approach to high-quality automated protein sequence annotation. - Steffen Möller; Ulf Leser; Wolfgang Fleischmann; Rolf Apweiler (Bioinform., 1999)

Removing redundancy in SWISS-PROT and TrEMBL. - Claire O'Donovan; Maria Jesus Martin; Eric Glémet; Jean-Jacques Codani; Rolf Apweiler (Bioinform., 1999)

The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999. - Amos Bairoch; Rolf Apweiler (Nucleic Acids Res., 1999)

Proteome Analysis: Application of InterPro and CluSTr for the Functional Classification of Proteins in Whole Genomes. - Margaret Biswas; Rolf Apweiler; Wolfgang Fleischmann; Alexander Kanapin; Youla Karavidopoulou; Paul J. Kersey; Evgenia V. Kriventseva; Virginie Mittard; Nicola J. Mulder; Thomas M. Oinn; Isabelle Phan; Evgeni M. Zdobnov (German Conference on Bioinformatics, 2000)

InterPro-an integrated documentation resource for protein families, domains and functional sites. - Rolf Apweiler; Terri K. Attwood; Amos Bairoch; Alex Bateman; Ewan Birney; Margaret Biswas; Philipp Bucher; Lorenzo Cerutti; Florence Corpet; Michael D. R. Croning; Richard Durbin; Laurent Falquet; et al. (Bioinform., 2000)

VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL. - Paul J. Kersey; Henning Hermjakob; Rolf Apweiler (Bioinform., 2000)

A comparison of signal sequence prediction methods using a test set of signal peptides. - Kerstin M. L. Menne; Henning Hermjakob; Rolf Apweiler (Bioinform., 2000)

A collection of well characterised integral membrane proteins. - Steffen Möller; Evgenia V. Kriventseva; Rolf Apweiler (Bioinform., 2000)

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. - Amos Bairoch; Rolf Apweiler (Nucleic Acids Res., 2000)

IntEnz - The Enzyme Database in Oracle. - Astrid Fleischmann; Michael Darsow; Kirill Degtyarenko; Rolf Apweiler (German Conference on Bioinformatics, 2001)

Automatic rule generation for protein annotation with the C4.5 data-mining algorithm applied on peptides in Ensembl. - Ernst Kretschmann; Rolf Apweiler (German Conference on Bioinformatics, 2001)

Towards a New Curation Environment for the TrEMBL Database. - Kai J. Runte; Henning Hermjakob; Rolf Apweiler (German Conference on Bioinformatics, 2001)

Functional Information in SWISS-PROT: the Basis for Large-scale Characterisation of Protein Sequences. - Rolf Apweiler (Briefings Bioinform., 2001)

Technical comment to "Database verification studies of SWISS-PROT and GenBank" by Karp et al. - Rolf Apweiler; Paul J. Kersey; Vivien Junker; Amos Bairoch (Bioinform., 2001)

Automatic rule generation for protein annotation with the C4.5 data mining algorithm applied on SWISS-PROT. - Ernst Kretschmann; Wolfgang Fleischmann; Rolf Apweiler (Bioinform., 2001)

Evaluation of methods for the prediction of membrane spanning regions. - Steffen Möller; Michael D. R. Croning; Rolf Apweiler (Bioinform., 2001)

InterProScan - an integration platform for the signature-recognition methods in InterPro. - Evgeni M. Zdobnov; Rolf Apweiler (Bioinform., 2001)

The InterPro database, an integrated documentation resource for protein families, domains and functional sites. - Rolf Apweiler; Terri K. Attwood; Amos Bairoch; Alex Bateman; Ewan Birney; Margaret Biswas; Philipp Bucher; Lorenzo Cerutti; Florence Corpet; Michael D. R. Croning; Richard Durbin; Laurent Falquet; et al. (Nucleic Acids Res., 2001)

Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes. - Rolf Apweiler; Margaret Biswas; Wolfgang Fleischmann; Alexander Kanapin; Youla Karavidopoulou; Paul J. Kersey; Evgenia V. Kriventseva; Virginie Mittard; Nicola J. Mulder; Isabelle Phan; Evgeni M. Zdobnov (Nucleic Acids Res., 2001)

CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins. - Evgenia V. Kriventseva; Wolfgang Fleischmann; Evgeni M. Zdobnov; Rolf Apweiler (Nucleic Acids Res., 2001)

Bioinformatics: Using the Molecular Biology Data. - Evgeni M. Zdobnov; Rodrigo Lopez; Rolf Apweiler; Thure Etzold (Essentials of Genomics and Bioinformatics, 2002)

Automation of Protein Sequence Characterization and Its Application in Whole Proteome Analysis. - Rolf Apweiler; Margaret Biswas; Wolfgang Fleischmann; Evgenia V. Kriventseva; Nicola J. Mulder (Gene Regulations and Metabolism, 2002)

Applications of InterPro in Protein Annotation and Genome Analysis. - Margaret Biswas; Joseph F. O'Rourke; Evelyn Camon; Gillian Fraser; Alexander Kanapin; Youla Karavidopoulou; Paul J. Kersey; Evgenia V. Kriventseva; Virginie Mittard; Nicola J. Mulder; Isabelle Phan; Florence Servant; et al. (Briefings Bioinform., 2002)

InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites - Nicola J. Mulder; Rolf Apweiler; Terri K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Margaret Biswas; Paul Bradley; Peer Bork; Philipp Bucher; Richard R. Copley; Emmanuel Courcelle; et al. (Briefings Bioinform., 2002)

High-quality Protein Knowledge Resource: SWISS-PROT and TrEMBL. - Claire O'Donovan; Maria Jesus Martin; Alexandre Gattiker; Elisabeth Gasteiger; Amos Bairoch; Rolf Apweiler (Briefings Bioinform., 2002)

Interactive InterPro-based comparisons of proteins in whole genomes. - Alexander Kanapin; Rolf Apweiler; Margaret Biswas; Wolfgang Fleischmann; Youla Karavidopoulou; Paul J. Kersey; Evgenia V. Kriventseva; Virginie Mittard; Nicola J. Mulder; Thomas M. Oinn; Isabelle Phan; Florence Servant; et al. (Bioinform., 2002)

Erratum: Evaluation of methods for the prediction of membrane spanning regions. - Steffen Möller; Michael D. R. Croning; Rolf Apweiler (Bioinform., 2002)

The EBI SRS server-recent developments. - Evgeni M. Zdobnov; Rodrigo Lopez; Rolf Apweiler; Thure Etzold (Bioinform., 2002)

The EBI SRS server-new features. - Evgeni M. Zdobnov; Rodrigo Lopez; Rolf Apweiler; Thure Etzold (Bioinform., 2002)

Consistent Integration of Non-reliable Heterogeneous Information Resources Applied to the Annotation of Transmembrane Proteins. - Steffen Möller; Michael Schroeder 001; Rolf Apweiler (Comput. Chem., 2002)

Organisation and standardisation of information in SWISS_PROT and TrEMBL. - Michele Magrane; Rolf Apweiler (Data Sci. J., 2002)

The Gene Ontology Annotation (GOA) Database - An integrated resource of GO annotations to the UniProt Knowledgebase. - Evelyn Camon; Daniel Barrell; Vivian Lee; Emily Dimmer; Rolf Apweiler (Silico Biol., 2003)

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. - Brigitte Boeckmann; Amos Bairoch; Rolf Apweiler; Marie-Claude Blatter; Anne Estreicher; Elisabeth Gasteiger; Maria Jesus Martin; Karine Michoud; Claire O'Donovan; Isabelle Phan; Sandrine Pilbout; Michel Schneider (Nucleic Acids Res., 2003)

The European Bioinformatics Institute's data resources. - Catherine Brooksbank; Evelyn Camon; Midori A. Harris; Michele Magrane; Maria Jesus Martin; Nicola J. Mulder; Claire O'Donovan; Helen E. Parkinson; Mary Ann Tuli; Rolf Apweiler; Ewan Birney; Alvis Brazma; et al. (Nucleic Acids Res., 2003)

Improvements to CluSTr: the database of SWISS-PROT+TrEMBL protein clusters. - Evgenia V. Kriventseva; Florence Servant; Rolf Apweiler (Nucleic Acids Res., 2003)

The InterPro Database, 2003 brings increased coverage and new features. - Nicola J. Mulder; Rolf Apweiler; Terri K. Attwood; Amos Bairoch; Daniel Barrell; Alex Bateman; David Binns; Margaret Biswas; Paul Bradley; Peer Bork; Philipp Bucher; Richard R. Copley; et al. (Nucleic Acids Res., 2003)

The Proteome Analysis database: a tool for the in silico analysis of whole proteomes. - Manuela Pruess; Wolfgang Fleischmann; Alexander Kanapin; Youla Karavidopoulou; Paul J. Kersey; Evgenia V. Kriventseva; Virginie Mittard; Nicola J. Mulder; Isabelle Phan; Florence Servant; Rolf Apweiler (Nucleic Acids Res., 2003)

Filtering erroneous protein annotation. - Daniela Wieser; Ernst Kretschmann; Rolf Apweiler (ISMB/ECCB (Supplement of Bioinformatics), 2004)

UniProt archive. - Rasko Leinonen; Federico Garcia Diez; David Binns; Wolfgang Fleischmann; Rodrigo Lopez; Rolf Apweiler (Bioinform., 2004)

GOA? - Use of Gene Ontology Annotation (GOA) for biological interpretation of '-omics' data and for validation of automatic annotation tools. - Vivian Lee; Evelyn Camon; Emily Dimmer; Daniel Barrell; Rolf Apweiler (Silico Biol., 2004)

The Integr8 project - a resource for genomic and proteomic data. - Manuela Pruess; Paul J. Kersey; Rolf Apweiler (Silico Biol., 2004)

Synergy between medical informatics and bioinformatics: facilitating genomic medicine for future health care. - Fernando Martín-Sánchez; Ilias Iakovidis; S. Nørager; Victor Maojo; Piet C. de Groen; Johan van der Lei; T. Jones; Klaus Abraham-Fuchs; Rolf Apweiler; Ankica Babic (J. Biomed. Informatics, 2004)

Integrating Genomic and Proteomic Data: The Integr8 Project. - Manuela Pruess; Paul J. Kersey; Rolf Apweiler (J. Integr. Bioinform., 2004)

UniProt: the Universal Protein knowledgebase. - Rolf Apweiler; Amos Bairoch; Cathy H. Wu; Winona C. Barker; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger; Hongzhan Huang; Rodrigo Lopez; Michele Magrane; Maria Jesus Martin; Darren A. Natale; et al. (Nucleic Acids Res., 2004)

The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology. - Evelyn Camon; Michele Magrane; Daniel Barrell; Vivian Lee; Emily Dimmer; John Maslen; David Binns; Nicola Harte; Rodrigo Lopez; Rolf Apweiler (Nucleic Acids Res., 2004)

IntEnz, the integrated relational enzyme database. - Astrid Fleischmann; Michael Darsow; Kirill Degtyarenko; Wolfgang Fleischmann; Sinéad Boyce; Kristian B. Axelsen; Amos Bairoch; Dietmar Schomburg; Keith F. Tipton; Rolf Apweiler (Nucleic Acids Res., 2004)

IntAct: an open source molecular interaction database. - Henning Hermjakob; Luisa Montecchi-Palazzi; Chris Lewington; Sugath Mudali; Samuel Kerrien; Sandra E. Orchard; Martin Vingron; Bernd Roechert; Peter Roepstorff; Alfonso Valencia; Hanah Margalit; John Armstrong; et al. (Nucleic Acids Res., 2004)

The EMBL Nucleotide Sequence Database. - Tamara Kulikova; Philippe Aldebert; Nicola Althorpe; Wendy Baker; Kirsty Bates; Paul Browne; Alexandra van den Broek; Guy Cochrane; Karyn Duggan; Ruth Y. Eberhardt; Nadeem Faruque; Maria Garcia-Pastor; et al. (Nucleic Acids Res., 2004)

Biological Databases: Infrastructure, Content and Integration. - Allyson L. Williams; Paul J. Kersey; Manuela Pruess; Rolf Apweiler (Data Analysis and Visualization in Genomics and Proteomics, 2005)

The Use of Common Ontologies and Controlled Vocabularies to Enable Data Exchange and Deposition for Complex Proteomic Experiments. - Sandra E. Orchard; Luisa Montecchi-Palazzi; Henning Hermjakob; Rolf Apweiler (Pacific Symposium on Biocomputing, 2005)

Do you do text? - Christian Blaschke; Alexander S. Yeh; Evelyn Camon; Marc E. Colosimo; Rolf Apweiler; Lynette Hirschman; Alfonso Valencia (Bioinform., 2005)

Dasty and UniProt DAS: a perfect pair for protein feature visualization. - Philip Jones; Nisha Vinod; Thomas A. Down; Andre Hackmann; Andreas Kähäri; Ernst Kretschmann; Antony F. Quinn; Daniela Wieser; Henning Hermjakob; Rolf Apweiler (Bioinform., 2005)

The predictive power of the CluSTr database. - Robert Petryszak; Ernst Kretschmann; Daniela Wieser; Rolf Apweiler (Bioinform., 2005)

An evaluation of GO annotation retrieval for BioCreAtIvE and GOA. - Evelyn Camon; Daniel Barrell; Emily Dimmer; Vivian Lee; Michele Magrane; John Maslen; David Binns; Rolf Apweiler (BMC Bioinform., 2005)

The Universal Protein Resource (UniProt). - Amos Bairoch; Rolf Apweiler; Cathy H. Wu; Winona C. Barker; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger; Hongzhan Huang; Rodrigo Lopez; Michele Magrane; Maria Jesus Martin; Darren A. Natale; et al. (Nucleic Acids Res., 2005)

The EMBL Nucleotide Sequence Database. - Carola Kanz; Philippe Aldebert; Nicola Althorpe; Wendy Baker; Alastair Baldwin; Kirsty Bates; Paul Browne; Alexandra van den Broek; Matias Castro; Guy Cochrane; Karyn Duggan; Ruth Y. Eberhardt; et al. (Nucleic Acids Res., 2005)

Integr8 and Genome Reviews: integrated views of complete genomes and proteomes. - Paul J. Kersey; Lawrence Bower; Lorna Morris; Alan Horne; Robert Petryszak; Carola Kanz; Alexander Kanapin; Ujjwal Das; Karine Michoud; Isabelle Phan; Alexandre Gattiker; Tamara Kulikova; et al. (Nucleic Acids Res., 2005)

InterPro, progress and status in 2005. - Nicola J. Mulder; Rolf Apweiler; Teresa K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Paul Bradley; Peer Bork; Phillip Bucher; Lorenzo Cerutti; Richard R. Copley; Emmanuel Courcelle; et al. (Nucleic Acids Res., 2005)

InterProScan: protein domains identifier. - Emmanuel Quevillon; Ville Silventoinen; Sharmila Pillai; Nicola Harte; Nicola J. Mulder; Rolf Apweiler; Rodrigo Lopez (Nucleic Acids Res., 2005)

E-MSD: an integrated data resource for bioinformatics. - Samir S. Velankar; P. McNeil; Virginie Mittard-Runte; A. Suarez; Daniel Barrell; Rolf Apweiler; Kim Henrick (Nucleic Acids Res., 2005)

UniSave: the UniProtKB Sequence/Annotation Version database. - Rasko Leinonen; Francesco Nardone; Weimin Zhu; Rolf Apweiler (Bioinform., 2006)

The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries. - Richard G. Côté; Philip Jones; Rolf Apweiler; Henning Hermjakob (BMC Bioinform., 2006)

EMBL Nucleotide Sequence Database: developments in 2005. - Guy Cochrane; Philippe Aldebert; Nicola Althorpe; Mikael Andersson; Wendy Baker; Alastair Baldwin; Kirsty Bates; Sumit Bhattacharyya; Paul Browne; Alexandra van den Broek; Matias Castro; Karyn Duggan; et al. (Nucleic Acids Res., 2006)

PRIDE: a public repository of protein and peptide identifications for the proteomics community. - Philip Jones; Richard G. Côté; Lennart Martens; Antony F. Quinn; Chris F. Taylor; William Derache; Henning Hermjakob; Rolf Apweiler (Nucleic Acids Res., 2006)

The Universal Protein Resource (UniProt): an expanding universe of protein information. - Cathy H. Wu; Rolf Apweiler; Amos Bairoch; Darren A. Natale; Winona C. Barker; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger; Hongzhan Huang; Rodrigo Lopez; Michele Magrane; Maria Jesus Martin; et al. (Nucleic Acids Res., 2006)

An Application of Latent Topic Document Analysis to Large-Scale Proteomics Databases. - Sebastian Klie; Lennart Martens; Juan Antonio Vizcaíno; Richard G. Côté; Philip Jones; Rolf Apweiler; Alexander Hinneburg; Henning Hermjakob (German Conference on Bioinformatics, 2007)

Analysing latent topics in large-scale proteomics. - Sebastian Klie; Alexander Hinneburg; Lennart Martens; Juan Antonio Vizcaíno; Richard G. Côté; Philip Jones; Rolf Apweiler; Henning Hermjakob (LWA, 2007)

The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases. - Richard G. Côté; Philip Jones; Lennart Martens; Samuel Kerrien; Florian Reisinger; Quan Lin; Rasko Leinonen; Rolf Apweiler; Henning Hermjakob (BMC Bioinform., 2007)

IntAct - open source resource for molecular interaction data. - Samuel Kerrien; Yasmin Alam-Faruque; Bruno Aranda; I. Bancarz; Alan J. Bridge; C. Derow; Emily Dimmer; Marc Feuermann; A. Friedrichsen; Rachael P. Huntley; C. Kohler; Jyoti Khadake; et al. (Nucleic Acids Res., 2007)

EMBL Nucleotide Sequence Database in 2006. - Tamara Kulikova; Ruth Akhtar; Philippe Aldebert; Nicola Althorpe; Mikael Andersson; Alastair Baldwin; Kirsty Bates; Sumit Bhattacharyya; Lawrence Bower; Paul Browne; Matias Castro; Guy Cochrane; et al. (Nucleic Acids Res., 2007)

New developments in the InterPro database. - Nicola J. Mulder; Rolf Apweiler; Teresa K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Peer Bork; Virginie Buillard; Lorenzo Cerutti; Richard R. Copley; Emmanuel Courcelle; Ujjwal Das; et al. (Nucleic Acids Res., 2007)

UniProtJAPI: a remote API for accessing UniProt data. - Samuel Patient; Daniela Wieser; Michael Kleen; Ernst Kretschmann; Maria Jesus Martin; Rolf Apweiler (Bioinform., 2008)

Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database. - Guy Cochrane; Ruth Akhtar; Philippe Aldebert; Nicola Althorpe; Alastair Baldwin; Kirsty Bates; Sumit Bhattacharyya; James K. Bonfield; Lawrence Bower; Paul Browne; Matias Castro; Tony Cox 001; et al. (Nucleic Acids Res., 2008)

The Ontology Lookup Service: more data and better tools for controlled vocabulary queries. - Richard G. Côté; Philip Jones; Lennart Martens; Rolf Apweiler; Henning Hermjakob (Nucleic Acids Res., 2008)

Verification of Uncurated Protein Annotations. - Francisco M. Couto; Mário J. Silva; Vivian Lee; Emily Dimmer; Evelyn Camon; Rolf Apweiler (Information Retrieval in Biomedicine, 2009)

QuickGO: a user tutorial for the web-based Gene Ontology browser. - Rachael P. Huntley; David Binns; Emily Dimmer; Daniel Barrell; Claire O'Donovan; Rolf Apweiler (Database J. Biol. Databases Curation, 2009)

QuickGO: a web-based tool for Gene Ontology searching. - David Binns; Emily Dimmer; Rachael P. Huntley; Daniel Barrell; Claire O'Donovan; Rolf Apweiler (Bioinform., 2009)

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. - Kai Ye 001; Marcel H. Schulz; Quan Long; Rolf Apweiler; Zemin Ning (Bioinform., 2009)

The GOA database in 2009 - an integrated Gene Ontology Annotation resource. - Daniel Barrell; Emily Dimmer; Rachael P. Huntley; David Binns; Claire O'Donovan; Rolf Apweiler (Nucleic Acids Res., 2009)

InterPro: the integrative protein signature database. - Sarah Hunter; Rolf Apweiler; Teresa K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Peer Bork; Ujjwal Das; Louise C. Daugherty; Lauranne Duquenne; Robert D. Finn; Julian Gough; et al. (Nucleic Acids Res., 2009)

Make Research Data Public?—Not Always so Simple: A Dialogue for Statisticians and Science Editors - Nell Sedransk; Lawrence H. Cox; Deborah Nolan; Keith Soper; Clifford H. Spiegelman; Linda J. Young; Katrina L. Kelner; Robert A. Moffitt; Ani Thakar; M. Jordan Raddick; Edward J. Ungvarsky; Richard W. Carlson; et al. (CoRR, 2010)

On the Importance of Comprehensible Classification Models for Protein Function Prediction. - Alex Alves Freitas; Daniela Wieser; Rolf Apweiler (IEEE ACM Trans. Comput. Biol. Bioinform., 2010)

The UniProt-GO Annotation database in 2011. - Emily C. Dimmer; Rachael P. Huntley; Yasmin Alam-Faruque; Tony Sawford; Claire O'Donovan; Maria Jesus Martin; Benoit Bely; Paul Browne; Wei Mun Chan; Ruth Y. Eberhardt; Michael Gardner; Kati Laiho; et al. (Nucleic Acids Res., 2012)

InterPro in 2011: new developments in the family and domain prediction database. - Sarah Hunter; Philip Jones; Alex L. Mitchell; Rolf Apweiler; Teresa K. Attwood; Alex Bateman; Thomas Bernard; David Binns; Peer Bork; Sarah W. Burge; Edouard De Castro; Penny C. Coggill; et al. (Nucleic Acids Res., 2012)

Use of Gene Ontology Annotation to understand the peroxisome proteome in humans. - Prudence Mutowo-Meullenet; Rachael P. Huntley; Emily C. Dimmer; Yasmin Alam-Faruque; Tony Sawford; Maria Jesus Martin; Claire O'Donovan; Rolf Apweiler (Database J. Biol. Databases Curation, 2013)

The European Bioinformatics Institute's data resources 2014. - Catherine Brooksbank; Mary Todd Bergman; Rolf Apweiler; Ewan Birney; Janet M. Thornton (Nucleic Acids Res., 2014)

The European Bioinformatics Institute in 2016: Data growth and integration. - Charles E. Cook; Mary Todd Bergman; Robert D. Finn; Guy Cochrane; Ewan Birney; Rolf Apweiler (Nucleic Acids Res., 2016)

The European Bioinformatics Institute in 2017: data coordination and integration. - Charles E. Cook; Mary Todd Bergman; Guy Cochrane; Rolf Apweiler; Ewan Birney (Nucleic Acids Res., 2018)

The European Bioinformatics Institute in 2018: tools, infrastructure and training. - Charles E. Cook; Rodrigo Lopez; Oana Stroe; Guy Cochrane; Cath Brooksbank; Ewan Birney; Rolf Apweiler (Nucleic Acids Res., 2019)

The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences. - Charles E. Cook; Oana Stroe; Guy Cochrane; Ewan Birney; Rolf Apweiler (Nucleic Acids Res., 2020)

The European Bioinformatics Institute: empowering cooperation in response to a global health crisis. - Gaia Cantelli; Guy Cochrane; Cath Brooksbank; Ellen M. McDonagh; Paul Flicek; Johanna R. McEntyre; Ewan Birney; Rolf Apweiler (Nucleic Acids Res., 2021)

The COVID-19 Data Portal: accelerating SARS-CoV-2 and COVID-19 research through rapid open access data sharing. - Peter W. Harrison; Rodrigo Lopez; Nadim Rahman; Stefan Gutnick Allen; Raheela Aslam; Nicola Buso; Carla A. Cummins; Yasmin Fathy; Eloy Felix; Mihai Glont; Suran Jayathilaka; Sandeep Kadam; et al. (Nucleic Acids Res., 2021)

The European Bioinformatics Institute (EMBL-EBI) in 2021. - Gaia Cantelli; Alex Bateman; Cath Brooksbank; Anton I. Petrov; Rahuman S. Malik-Sheriff; Michele Ide-Smith; Henning Hermjakob; Paul Flicek; Rolf Apweiler; Ewan Birney; Johanna R. McEntyre (Nucleic Acids Res., 2022)