UniMoG - a unifying framework for genomic distance calculation and sorting based on DCJ. - Rolf Hilker; Corinna Sickinger; Christian N. S. Pedersen; Jens Stoye (Bioinform., 2012)

ReadXplorer - visualization and analysis of mapped sequences. - Rolf Hilker; Kai Bernd Stadermann; Daniel Doppmeier; Jörn Kalinowski; Jens Stoye; Jasmin Straube; Jörn Winnebald; Alexander Goesmann (Bioinform., 2014)

Development of a read mapping analysis software and computational pan genome analysis of 20 Pseudomonas aeruginosa strains - Rolf Hilker (2015)

ReadXplorer 2 - detailed read mapping analysis and visualization from one single source. - Rolf Hilker; Kai Bernd Stadermann; Oliver Schwengers; Evgeny Anisiforov; Sebastian Jaenicke; Bernd Weisshaar; Tobias Zimmermann; Alexander Goesmann (Bioinform., 2016)