Metabolic network visualization using constraint planar graph drawing algorithm. - Romain Bourqui; David Auber; Vincent Lacroix; Fabien Jourdan (IV, 2006)

How to Draw ClusteredWeighted Graphs using a Multilevel Force-Directed Graph Drawing Algorithm. - Romain Bourqui; David Auber; Patrick Mary (IV, 2007)

Mining Networks through Visual Analytics: Incremental Hypothesis Building and Validation. - David Auber; Romain Bourqui; Guy Melançon (NATO ASI Mining Massive Data Sets for Security, 2007)

Metabolic network visualization eliminating node redundance and preserving metabolic pathways. - Romain Bourqui; Ludovic Cottret; Vincent Lacroix; David Auber; Patrick Mary; Marie-France Sagot; Fabien Jourdan (BMC Syst. Biol., 2007)

Revealing Subnetwork Roles using Contextual Visualization: Comparison of Metabolic Networks. - Romain Bourqui; Fabien Jourdan (IV, 2008)

Décomposition et Visualisation de graphes : Applications aux Données Biologiques. - Romain Bourqui (2008)

Detecting Structural Changes and Command Hierarchies in Dynamic Social Networks. - Romain Bourqui; Frédéric Gilbert 001; Paolo Simonetto; Faraz Zaidi; Umang Sharan; Fabien Jourdan (ASONAM, 2009)

A Stable Decomposition Algorithm for Dynamic Social Network Analysis. - Romain Bourqui; Paolo Simonetto; Fabien Jourdan (EGC (best of volume), 2009)

Un algorithme stable de décomposition pour l'analyse des réseaux sociaux dynamiques. - Romain Bourqui; Paolo Simonetto; Fabien Jourdan (EGC, 2009)

Large Quasi-Tree Drawing: A Neighborhood Based Approach. - Romain Bourqui; David Auber (IV, 2009)

Visualizing Temporal Dynamics at the Genomic and Metabolic Level. - Romain Bourqui; Michel A. Westenberg (IV, 2009)

Tulip : a scalable graph visualization framework. - David Auber; Patrick Mary; Morgan Mathiaut; Jonathan Dubois; Antoine Lambert; Daniel Archambault; Romain Bourqui; Bruno Pinaud; Maylis Delest; Guy Melançon (EGC, 2010)

3D Edge Bundling for Geographical Data Visualization. - Antoine Lambert; Romain Bourqui; David Auber (IV, 2010)

Winding Roads: Routing edges into bundles. - Antoine Lambert; Romain Bourqui; David Auber (Comput. Graph. Forum, 2010)

Domain specific vs Generic Network Visualization: an Evaluation with Metabolic Networks. - Romain Bourqui; Helen C. Purchase; Fabien Jourdan (AUIC, 2011)

Pathway Preserving Representation of Metabolic Networks. - Antoine Lambert; Jonathan Dubois; Romain Bourqui (Comput. Graph. Forum, 2011)

ImPrEd: An Improved Force-Directed Algorithm that Prevents Nodes from Crossing Edges. - Paolo Simonetto; Daniel Archambault; David Auber; Romain Bourqui (Comput. Graph. Forum, 2011)

Communities and hierarchical structures in dynamic social networks: analysis and visualization. - Frédéric Gilbert 001; Paolo Simonetto; Faraz Zaidi; Fabien Jourdan; Romain Bourqui (Soc. Netw. Anal. Min., 2011)

Systrip: A Visual Environment for the Investigation of Time-series Data in the Context of Metabolic Networks. - Jonathan Dubois; Ludovic Cottret; Amine Ghozlane; David Auber; Frédéric Bringaud; Patricia Thébault; Fabien Jourdan; Romain Bourqui (IV, 2012)

Visualizing Patterns in Node-link Diagrams. - Antoine Lambert; François Queyroi; Romain Bourqui (IV, 2012)

Genome-wide detection of sRNA targets with rNAV. - Jonathan Dubois; Amine Ghozlane; Patricia Thébault; Isabelle Dutour; Romain Bourqui (BioVis, 2013)

Tulip III. - David Auber; Daniel Archambault; Romain Bourqui; Maylis Delest; Jonathan Dubois; Bruno Pinaud; Antoine Lambert; Patrick Mary; Morgan Mathiaut; Guy Melançon (Encyclopedia of Social Network Analysis and Mining, 2014)

Visual graph analysis for quality assessment of manually labelled documents image database. - Romain Giot; Romain Bourqui; Nicholas Journet; Anne Vialard (ICDAR, 2015)

Fast Graph Drawing Algorithm Revealing Networks Cores. - Romain Giot; Romain Bourqui (IV, 2015)

Edge Visual Encodings in Matrix-Based Diagrams. - Joris Sansen; Romain Bourqui; Bruno Pinaud; Helen C. Purchase (IV, 2015)

Adjasankey: Visualization of Huge Hierarchical Weighted and Directed Graphs. - Joris Sansen; Frédéric Lalanne; David Auber; Romain Bourqui (IV, 2015)

Large interactive visualization of density functions on big data infrastructure. - Alexandre Perrot; Romain Bourqui; Nicolas Hanusse; Frédéric Lalanne; David Auber (LDAV, 2015)

Advantages of mixing bioinformatics and visualization approaches for analyzing sRNA-mediated regulatory bacterial networks. - Patricia Thébault; Romain Bourqui; William Benchimol; Christine Gaspin; Pascal Sirand-Pugnet; Raluca Uricaru; Isabelle Dutour (Briefings Bioinform., 2015)

Multilayer graph edge bundling. - Romain Bourqui; Dino Ienco; Arnaud Sallaberry; Pascal Poncelet (PacificVis, 2016)

Audit d'une base de documents étiquetée. - Romain Giot; Romain Bourqui; Nicholas Journet; Anne Vialard (CORIA-CIFED, 2016)

Zoo Graph: A New Visualisation for Biometric System Evaluation. - Romain Giot; Romain Bourqui; Mohamad El-Abed (IV, 2016)

Visualization of sRNA-mRNA Interaction Predictions. - Joris Sansen; Patricia Thébault; Isabelle Dutour; Romain Bourqui (IV, 2016)

Deciphering Gene Sets Annotations with Ontology Based Visualization. - Aarón Ayllón-Benítez; Patricia Thébault; Jesualdo Tomás Fernández-Breis; Manuel Quesada-Martínez; Fleur Mougin; Romain Bourqui (IV, 2017)

HeatPipe: High Throughput, Low Latency Big Data Heatmap with Spark Streaming. - Alexandre Perrot; Romain Bourqui; Nicolas Hanusse; David Auber (IV, 2017)

rNAV 2.0: a visualization tool for bacterial sRNA-mediated regulatory networks mining. - Romain Bourqui; Isabelle Dutour; Jonathan Dubois; William Benchimol; Patricia Thébault (BMC Bioinform., 2017)

Visual Exploration of Large Multidimensional Data Using Parallel Coordinates on Big Data Infrastructure. - Joris Sansen; Gaëlle Richer; Timothée Jourde; Frédéric Lalanne; David Auber; Romain Bourqui (Informatics, 2017)

Enabling Hierarchical Exploration for Large-Scale Multidimensional Data with Abstract Parallel Coordinates. - Gaëlle Richer; Joris Sansen; Frédéric Lalanne; David Auber; Romain Bourqui (EDBT/ICDT Workshops, 2018)

Tulip 5. - David Auber; Daniel Archambault; Romain Bourqui; Maylis Delest; Jonathan Dubois; Antoine Lambert; Patrick Mary; Morgan Mathiaut; Guy Melançon; Bruno Pinaud; Benjamin Renoust; Jason Vallet (Encyclopedia of Social Network Analysis and Mining. 2nd Ed., 2018)

CorFish: Coordinating Emphasis Across Multiple Views Using Spatial Distortion. - Gaëlle Richer; Romain Bourqui; David Auber (PacificVis, 2019)

HiePaCo: Scalable Hierarchical Exploration in Abstract Parallel Coordinates Under Budget Constraints. - Gaëlle Richer; Joris Sansen; Frédéric Lalanne; David Auber; Romain Bourqui (Big Data Res., 2019)

Toward automatic comparison of visualization techniques: Application to graph visualization. - Romain Bourqui; Romain Giot; David Auber (CoRR, 2019)

Deep Dive into Deep Neural Networks with Flows. - Adrien Halnaut; Romain Giot; Romain Bourqui; David Auber (VISIGRAPP (3: IVAPP), 2020)

Samples Classification Analysis Across DNN Layers with Fractal Curves. - Adrien Halnaut; Romain Giot; Romain Bourqui; David Auber (ICPR Workshops (3), 2020)

Features Understanding in 3D CNNs for Actions Recognition in Video. - Kazi Ahmed Asif Fuad; Pierre-Etienne Martin; Romain Giot; Romain Bourqui; Jenny Benois-Pineau; Akka Zemmari (IPTA, 2020)

Toward automatic comparison of visualization techniques: Application to graph visualization. - Loann Giovannangeli; Romain Bourqui; Romain Giot; David Auber (Vis. Informatics, 2020)

Deep Neural Network for DrawiNg Networks, $${(DNN)^{ textit{2} , }} $$. - Loann Giovannangeli; Frédéric Lalanne; David Auber; Romain Giot; Romain Bourqui (GD, 2021)

Analysis of Deep Neural Networks Correlations with Human Subjects on a Perception Task. - Loann Giovannangeli; Romain Giot; David Auber; Jenny Benois-Pineau; Romain Bourqui (IV, 2021)

Visualizing Food-Drug Interactions in the Thériaque Database. - Frédéric Lalanne; Pierrick Bedouch; Cyril Simonnet; Vincent Depras; Georgeta Bordea; Romain Bourqui; Thierry Hamon; Frantz Thiessard; Fleur Mougin (MIE, 2021)

Impacts of the Numbers of Colors and Shapes on Outlier Detection: from Automated to User Evaluation. - Loann Giovannangeli; Romain Giot; David Auber; Romain Bourqui (CoRR, 2021)

Deep Neural Network for DrawiNg Networks, (DNN)2. - Loann Giovannangeli; Frédéric Lalanne; David Auber; Romain Giot; Romain Bourqui (CoRR, 2021)

FORBID: Fast Overlap Removal by Stochastic GradIent Descent for Graph Drawing. - Loann Giovannangeli; Frédéric Lalanne; Romain Giot; Romain Bourqui (GD, 2022)

Multi Layered Feature Explanation Method for Convolutional Neural Networks. - Luca Bourroux; Jenny Benois-Pineau; Romain Bourqui; Romain Giot (ICPRAI (1), 2022)

VRGrid: Efficient Transformation of 2D Data into Pixel Grid Layout. - Adrien Halnaut; Romain Giot; Romain Bourqui; David Auber (IV, 2022)

Relative Confusion Matrix: Efficient Comparison of Decision Models. - Luc-Etienne Pommé; Romain Bourqui; Romain Giot; David Auber (IV, 2022)

Color and Shape efficiency for outlier detection from automated to user evaluation. - Loann Giovannangeli; Romain Bourqui; Romain Giot; David Auber (Vis. Informatics, 2022)

H²O: Heatmap by Hierarchical Occlusion. - Luc-Etienne Pommé; Romain Bourqui; Romain Giot (CBMI, 2023)

State of the Art of Visual Analytics for eXplainable Deep Learning. - Biagio La Rosa; Graziano Blasilli; Romain Bourqui; David Auber; Giuseppe Santucci; Roberto Capobianco; Enrico Bertini; Romain Giot; Marco Angelini (Comput. Graph. Forum, 2023)

NetPrune: A sparklines visualization for network pruning. - Luc-Etienne Pommé; Romain Bourqui; Romain Giot; Jason Vallet; David Auber (Vis. Informatics, 2023)

Mean Opinion Score as a New Metric for User-Evaluation of XAI Methods. - Hyeon Yu; Jenny Benois-Pineau; Romain Bourqui; Romain Giot; Alexey Zhukov (ICPR (Workshops and Challenges, 6), 2024)

Guaranteed Visibility in Scatterplots with Tolerance. - Loann Giovannangeli; Frédéric Lalanne; Romain Giot; Romain Bourqui (IEEE Trans. Vis. Comput. Graph., 2024)

Toward Efficient Deep Learning for Graph Drawing (DL4GD). - Loann Giovannangeli; Frédéric Lalanne; David Auber; Romain Giot; Romain Bourqui (IEEE Trans. Vis. Comput. Graph., 2024)

Overlap Removal by Stochastic Gradient Descent With(out) Shape Awareness. - Loann Giovannangeli; Frédéric Lalanne; Romain Giot; Romain Bourqui (IEEE Trans. Vis. Comput. Graph., 2024)