Alvira: comparative genomics of viral strains. - François Enault; Romain Fremez; Eric Baranowski; Thomas Faraut (Bioinform., 2007)

Phylogenetic exploration of bacterial genomic rearrangements. - Romain Fremez; Thomas Faraut; Gwennaele Fichant; Jérôme Gouzy; Yves Quentin (Bioinform., 2007)

Narcisse: a mirror view of conserved syntenies. - Emmanuel Courcelle; Yoann Beausse; Sébastien Letort; Olivier Stahl; Romain Fremez; Catherine Ngom-Bru; Jérôme Gouzy; Thomas Faraut (Nucleic Acids Res., 2008)