Simulating Cortical Development as a Self Constructing Process: A Novel Multi-Scale Approach Combining Molecular and Physical Aspects. - Frederic Zubler; Andreas Hauri; Sabina S. Pfister; Roman Bauer 001; John C. Anderson; Adrian M. Whatley; Rodney J. Douglas (PLoS Comput. Biol., 2013)

Self-construction and -configuration of functional neuronal networks. - Roman Bauer 001 (2013)

Developmental Self-Construction and -Configuration of Functional Neocortical Neuronal Networks. - Roman Bauer 001; Frédéric Zubler; Sabina S. Pfister; Andreas Hauri; Michael Pfeiffer 001; Dylan R. Muir; Rodney J. Douglas (PLoS Comput. Biol., 2014)

The BioDynaMo Project. - Roman Bauer 001; Lukas Breitwieser; Alberto Di Meglio; Leonard Johard; Marcus Kaiser; Marco Manca 002; Manuel Mazzara; Max Talanov (CoRR, 2016)

The BioDynaMo Project: Creating a Platform for Large-Scale Reproducible Biological Simulations. - Lukas Breitwieser; Roman Bauer 001; Alberto Di Meglio; Leonard Johard; Marcus Kaiser; Marco Manca 002; Manuel Mazzara; Fons Rademakers; Max Talanov (CoRR, 2016)

An optimization approach for agent-based computational models of biological development. - Pablo González de Aledo; Andrey Vladimirov; Marco Manca 002; Jerry Baugh; Ryo Asai; Marcus Kaiser; Roman Bauer 001 (Adv. Eng. Softw., 2018)

BioDynaMo: an agent-based simulation platform for scalable computational biology research. - Lukas Breitwieser; Ahmad Hesam; Jean de Montigny; Vasileios Vavourakis; Alexandros Iosif; Jack Jennings; Marcus Kaiser; Marco Manca 002; Alberto Di Meglio; Zaid Al-Ars; Fons Rademakers; Onur Mutlu; et al. (CoRR, 2020)

A generative growth model for thalamocortical axonal branching in primary visual cortex. - Pegah Kassraian-Fard; Michael Pfeiffer 001; Roman Bauer 001 (PLoS Comput. Biol., 2020)

Human-Like Rule Learning from Images Using One-Shot Hypothesis Derivation. - Dany Varghese; Roman Bauer 001; Daniel Baxter-Beard; Stephen H. Muggleton; Alireza Tamaddoni-Nezhad (ILP, 2021)

The Multiple Dimensions of Networks in Cancer: A Perspective. - Cristian Axenie; Roman Bauer 001; María Rodríguez Martínez (Symmetry, 2021)

BioDynaMo: a modular platform for high-performance agent-based simulation. - Lukas Breitwieser; Ahmad Hesam; Jean de Montigny; Vasileios Vavourakis; Alexandros Iosif; Jack Jennings; Marcus Kaiser; Marco Manca 002; Alberto Di Meglio; Zaid Al-Ars; Fons Rademakers; Onur Mutlu; et al. (Bioinform., 2022)

A Structural Characterisation of the Mitogen-Activated Protein Kinase Network in Cancer. - Evangelos Chatzaroulas; Vytenis Sliogeris; Pedro Victori; Francesca M. Buffa; Sotiris Moschoyiannis; Roman Bauer 001 (Symmetry, 2022)

A 3D Agent-Based Model of Lung Fibrosis. - Nicolò Cogno; Roman Bauer 001; Marco Durante (Symmetry, 2022)

Few-Shot Learning of Diagnostic Rules for Neurodegenerative Diseases Using Inductive Logic Programming. - Dany Varghese; Roman Bauer 001; Alireza Tamaddoni-Nezhad (ILP, 2023)

Recipes for calibration and validation of agent-based models in cancer biomedicine. - Nicolò Cogno; Cristian Axenie; Roman Bauer 001; Vasileios Vavourakis (CoRR, 2023)

Calibration of stochastic, agent-based neuron growth models with Approximate Bayesian Computation. - Tobias Duswald; Lukas Breitwieser; Thomas Thorne; Barbara I. Wohlmuth; Roman Bauer 001 (CoRR, 2024)

Applied Antifragility in Natural Systems - From Principles to Applications - Cristian Axenie; Roman Bauer 001; Oliver López-Corona; Jeffrey West (Springer, 2025)