Predicting subcellular localization of proteins using machine-learned classifiers. - Zhiyong Lu; Duane Szafron; Russell Greiner; Paul Lu; David S. Wishart; Brett Poulin; John Anvik; Cam Macdonell; Roman Eisner (Bioinform., 2004)

Proteome Analyst: custom predictions with explanations in a web-based tool for high-throughput proteome annotations. - Duane Szafron; Paul Lu; Russell Greiner; David S. Wishart; Brett Poulin; Roman Eisner; Zhiyong Lu; John Anvik; Cam Macdonell; Alona Fyshe; David Meeuwis (Nucleic Acids Res., 2004)

The Proteome Analyst Suite of Automated Function Prediction Tools. - Brett Poulin; Duane Szafron; Paul Lu; Russell Greiner; David S. Wishart; Roman Eisner; Alona Fyshe; Brandon Pearcy; Luca Pireddu (AAAI, 2005)

Improving Protein Function Prediction Using the Hierarchical Structure of the Gene Ontology. - Roman Eisner; Brett Poulin; Duane Szafron; Paul Lu; Russell Greiner (CIBCB, 2005)

PA-GOSUB: a searchable database of model organism protein sequences with their predicted Gene Ontology molecular function and subcellular localization. - Paul Lu; Duane Szafron; Russell Greiner; David S. Wishart; Alona Fyshe; Brandon Pearcy; Brett Poulin; Roman Eisner; Danny Ngo; Nicholas Lamb (Nucleic Acids Res., 2005)

Visual Explanation of Evidence with Additive Classifiers. - Brett Poulin; Roman Eisner; Duane Szafron; Paul Lu; Russell Greiner; David S. Wishart; Alona Fyshe; Brandon Pearcy; Cam Macdonell; John Anvik (AAAI, 2006)

Biospider: A Web Server for Automating Metabolome Annotations. - Craig Knox; Savita Shrivastava; Paul Stothard; Roman Eisner; David S. Wishart (Pacific Symposium on Biocomputing, 2007)

HMDB: the Human Metabolome Database. - David S. Wishart; Dan Tzur; Craig Knox; Roman Eisner; Anchi Guo; Nelson Young; Dean Cheng; Kevin Jewell; David Arndt; Summit Sawhney; Chris Fung; Lisa Nikolai; et al. (Nucleic Acids Res., 2007)

HMDB: a knowledgebase for the human metabolome. - David S. Wishart; Craig Knox; Anchi Guo; Roman Eisner; Nelson Young; Bijaya Gautam; David D. Hau; Nick Psychogios; Edison Dong; Souhaila Bouatra; Rupasri Mandal; Igor Sinelnikov; et al. (Nucleic Acids Res., 2009)

Phenol-Explorer: an online comprehensive database on polyphenol contents in foods. - Vanessa Neveu; Jara Perez-Jimenez; Femke Vos; Vanessa Crespy; Lerman du Chaffaut; Louise Mennen; Craig Knox; Roman Eisner; Joseph A. Cruz; David S. Wishart; Augustin Scalbert (Database J. Biol. Databases Curation, 2010)

DrugBank 3.0: a comprehensive resource for 'Omics' research on drugs. - Craig Knox; Vivian Law; Timothy Jewison; Philip Liu; Son Ly; Alex Frolkis; Allison Pon; Kelly Banco; Christine Mak; Vanessa Neveu; Yannick Djoumbou; Roman Eisner; et al. (Nucleic Acids Res., 2011)

Phenol-Explorer 2.0: a major update of the Phenol-Explorer database integrating data on polyphenol metabolism and pharmacokinetics in humans and experimental animals. - Joseph A. Rothwell; Mireia Urpi-Sarda; Maria Boto-Ordoñez; Craig Knox; Rafael Llorach; Roman Eisner; Joseph A. Cruz; Vanessa Neveu; David S. Wishart; Claudine Manach; Cristina Andres-Lacueva; Augustin Scalbert (Database J. Biol. Databases Curation, 2012)

Phenol-Explorer 3.0: a major update of the Phenol-Explorer database to incorporate data on the effects of food processing on polyphenol content. - Joseph A. Rothwell; Jara Perez-Jimenez; Vanessa Neveu; Alexander Medina-Remón; Nouha M'Hiri; Paula García-Lobato; Claudine Manach; Craig Knox; Roman Eisner; David S. Wishart; Augustin Scalbert (Database J. Biol. Databases Curation, 2013)

HMDB 3.0 - The Human Metabolome Database in 2013. - David S. Wishart; Timothy Jewison; Anchi Guo; Michael Wilson 002; Craig Knox; Yifeng Liu 001; Yannick Djoumbou; Rupasri Mandal; Farid Aziat; Edison Dong; Souhaila Bouatra; Igor Sinelnikov; et al. (Nucleic Acids Res., 2013)

Accurate, fully-automated NMR spectral profiling for metabolomics. - Siamak Ravanbakhsh; Philip Liu; Trent C. Bjorndahl; Rupasri Mandal; Jason R. Grant; Michael Wilson 002; Roman Eisner; Igor Sinelnikov; Xiaoyu Hu; Claudio Luchinat; Russell Greiner; David S. Wishart (CoRR, 2014)

ClassyFire: automated chemical classification with a comprehensive, computable taxonomy. - Yannick Djoumbou; Roman Eisner; Craig Knox; Leonid L. Chepelev; Janna Hastings; Gareth I. Owen; Eoin Fahy; Christoph Steinbeck; Shankar Subramanian; Evan Bolton; Russell Greiner; David S. Wishart (J. Cheminformatics, 2016)