Efficient Algorithm for Microarray Probes Re-annotation. - Pawel Foszner; Aleksandra Gruca; Andrzej Polanski; Michal Marczyk; Roman Jaksik; Joanna Polanska (ICCCI (2), 2011)

Regulation of p53 by siRNA in radiation treated cells: Simulation studies. - Krzysztof Puszynski; Roman Jaksik; Andrzej Swierniak (Int. J. Appl. Math. Comput. Sci., 2012)

Comparative analysis of the annotation systems of Mus musculus high density expression microarray. - Anna Cichonska; Roman Jaksik; Joanna Polanska; Wieslawa Widlak (IWBBIO, 2013)

Adaptive filtering of microarray gene expression data based on Gaussian mixture decomposition. - Michal Marczyk; Roman Jaksik; Andrzej Polanski; Joanna Polanska (BMC Bioinform., 2013)

Sources of High Variance between Probe Signals in Affymetrix Short Oligonucleotide Microarrays. - Roman Jaksik; Michal Marczyk; Joanna Polanska; Joanna Rzeszowska-Wolny (Sensors, 2014)

An Efficient Algorithm for Microarray Probes Re-annotation. - Pawel Foszner; Aleksandra Gruca; Andrzej Polanski; Michal Marczyk; Roman Jaksik; Joanna Polanska (Trans. Comput. Collect. Intell., 2014)

Nucleotide Composition Based Measurement Bias in High Throughput Gene Expression Studies. - Roman Jaksik; Wojciech Bensz; Jaroslaw Smieja (ICMMI, 2015)

Cancer - A Story on Fault Propagation in Gene-Cellular Networks. - Damian Borys; Roman Jaksik; Michal Krzeslak; Jaroslaw Smieja; Andrzej Swierniak (Propagation Phenomena in Real World Networks, 2015)

A Holistic Approach to Testing Biomedical Hypotheses and Analysis of Biomedical Data. - Krzysztof Psiuk-Maksymowicz; Aleksander Placzek; Roman Jaksik; Sebastian Student; Damian Borys; Dariusz Mrozek; Krzysztof Fujarewicz; Andrzej Swierniak (BDAS, 2016)

Scalability of a Genomic Data Analysis in the BioTest Platform. - Krzysztof Psiuk-Maksymowicz; Dariusz Mrozek; Roman Jaksik; Damian Borys; Krzysztof Fujarewicz; Andrzej Swierniak (ACIIDS (2), 2017)

Functional Interpretation of Gene Sets: Semantic-Based Clustering of Gene Ontology Terms on the BioTest Platform. - Aleksandra Gruca; Roman Jaksik; Krzysztof Psiuk-Maksymowicz (ICMMI, 2017)

The Use of Distributed Data Storage and Processing Systems in Bioinformatic Data Analysis. - Michal Bochenek; Kamil Folkert; Roman Jaksik; Michal Krzeslak; Marcin Michalak 001; Marek Sikora; Tomasz Steclik; Lukasz Wróbel (BDAS, 2018)

Detection of Genetic Aberrations in Cancer Driving Signaling Pathways Based on Joint Analysis of Heterogeneous Genomics Data. - Roman Jaksik; Krzysztof Fujarewicz (ICITS, 2018)

Identification of Factors that Affect Reproducibility of Mutation Calling Methods in Data Originating from the Next-Generation Sequencing. - Roman Jaksik; Krzysztof Psiuk-Maksymowicz; Andrzej Swierniak (ISCIS, 2018)

Nucleotide composition bias in high throughput gene expression measurement methods. - Roman Jaksik; Anna Lalik; Krzysztof Puszynski (ICSPCS, 2019)

Analysis of factors affecting the precision of gene expression measurement methods. - Anna Lalik; Krzysztof Puszynski; Roman Jaksik (ICSPCS, 2019)

Correction of the genes expression measurements based on the probes design features. - Krzysztof Puszynski; Anna Lalik; Roman Jaksik (ICSPCS, 2019)

BioTest - Remote Platform for Hypothesis Testing and Analysis of Biomedical Data. - Krzysztof Psiuk-Maksymowicz; Roman Jaksik; Aleksander Placzek; Aleksandra Gruca; Sebastian Student; Damian Borys; Dariusz Mrozek; Krzysztof Fujarewicz; Andrzej Swierniak (PCBBE, 2019)

Cell Cycle as a Fault Tolerant Control System. - Jaroslaw Smieja; Andrzej Swierniak; Roman Jaksik (KKA, 2020)

Heuristic Search of Exact Biclusters in Binary Data. - Marcin Michalak 001; Roman Jaksik; Dominik Slezak (Int. J. Appl. Math. Comput. Sci., 2020)

GaMRed - Adaptive Filtering of High-Throughput Biological Data. - Michal Marczyk; Roman Jaksik; Andrzej Polanski; Joanna Polanska (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Prediction of Lung Cancer Survival Based on Multiomic Data. - Roman Jaksik; Jaroslaw Smieja (ACIIDS (2), 2022)