HH-MOTiF: de novo detection of short linear motifs in proteins by Hidden Markov Model comparisons. - Roman Prytuliak; Michael Volkmer; Markus Meier; Bianca Habermann (Nucleic Acids Res., 2017)

SLALOM, a flexible method for the identification and statistical analysis of overlapping continuous sequence elements in sequence- and time-series data. - Roman Prytuliak; Friedhelm Pfeiffer; Bianca Habermann (BMC Bioinform., 2018)