An XML standard for the dissemination of annotated 2D gel electrophoresis data complemented with mass spectrometry results. - Romesh Stanislaus; Liu Hong Jiang; Martha Swartz; John M. Arthur; Jonas S. Almeida (BMC Bioinform., 2004)

AGML Central: web based gel proteomic infrastructure. - Romesh Stanislaus; Chuming Chen; Jennifer Franklin; John M. Arthur; Jonas S. Almeida (Bioinform., 2005)

An open-source representation for 2-DE-centric proteomics and support infrastructure for data storage and analysis. - Romesh Stanislaus; John M. Arthur; Balaji Rajagopalan; Rick Moerschell; Brian McGlothlen; Jonas S. Almeida (BMC Bioinform., 2008)

RPPAML/RIMS: A metadata format and an information management system for reverse phase protein arrays. - Romesh Stanislaus; Mark Carey; Helena F. Deus; Kevin R. Coombes; Bryan T. J. Hennessy; Gordon B. Mills; Jonas S. Almeida (BMC Bioinform., 2008)

S3QL: A distributed domain specific language for controlled semantic integration of life sciences data. - Helena F. Deus; Miria C. Correa; Romesh Stanislaus; Maria Miragaia; Wolfgang Maass 002; Hermínia de Lencastre; Ronan Fox; Jonas S. Almeida (BMC Bioinform., 2011)

Machine learning to predict extubation outcome in premature infants. - Martina Mueller; Carol C. Wagner; Romesh Stanislaus; Jonas S. Almeida (IJCNN, 2013)