The impact of the quality filter for RNA-Seq data over differential expression profile. - Pablo C. Gomes de Sa; Siomar de Castro Soares; Adonney A. de Oliveira Veras; Anne C. Pinto; Luis Guimarães; Vasco Ariston de Carvalho Azevedo; Artur Silva; Rommel Ramos (IWBBIO, 2014)

SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology. - Diego C. B. Mariano; Felipe L. Pereira; Edgar L. Aguiar; Letícia de Castro Oliveira; Leandro Benevides; Luis Guimarães; Edson Luiz Folador; Thiago J. Sousa; Preetam Ghosh; Debmalya Barh; Henrique C. P. Figueiredo; Artur Silva; et al. (BMC Bioinform., 2016)

Improving Metagenomic Assemblies Through Data Partitioning: A GC Content Approach. - Fábio Miranda 002; Cassio T. Batista; Artur Silva; Jefferson Morais; Nelson Neto 001; Rommel Ramos (IWBBIO (1), 2018)

A Clustering Approach to Identify Candidates to Housekeeping Genes Based on RNA-seq Data. - Edian F. Franco; Dener Maués; Ronnie Alves; Luis Guimarães; Vasco Ariston de Carvalho Azevedo; Artur Silva; Preetam Ghosh; Jefferson Morais; Rommel Thiago Juca Ramos (BSB, 2019)

One-Class SVM to Identify Candidates to Reference Genes Based on the Augment of RNA-seq Data with Generative Adversarial Networks. - Edwin J. Rueda; Rommel Ramos; Edian F. Franco; Orlando Belo; Jefferson Morais (ICCSA (1), 2020)

Redundancy Treatment of NGS Contigs in Microbial Genome Finishing with Hashing-Based Approach. - Marcus de Barros Braga; Kenny Pinheiro; Fabrício Almeida Araújo; Fábio Miranda 002; Artur Silva; Rommel Ramos (BSB, 2020)

The experience of teaching introductory programming skills to bioscientists in Brazil. - Luíza Zuvanov; Ana Letycia Basso Garcia; Fernando Henrique Correr; Rodolfo Bizarria Jr.; Ailton Pereira da Costa Filho; Alisson Hayasi da Costa; Andréa T. Thomaz; Ana Lucia Mendes Pinheiro; Diego Mauricio Riaño-Pachón; Flavia Vischi Winck; Franciele Grego Esteves; Gabriel Rodrigues Alves Margarido; et al. (PLoS Comput. Biol., 2021)

In silico approach to identify microsatellite candidate biomarkers to differentiate the biovar of Corynebacterium pseudotuberculosis genomes. - Kenny da Costa Pinheiro; Bruna Verônica Azevedo Gois; Wylerson Guimarães Nogueira; Fabrício Almeida Araújo; Ana Lídia Cavalcante Queiroz; Oscar Cardenas-Alegria; Artur Luiz da Costa da Silva; Antônio Márcio Gomes Martins Júnior; Rommel Thiago Juca Ramos (Frontiers Bioinform., 2022)

SATIN: a micro and mini satellite mining tool of total genome and coding regions with analysis of perfect repeats polymorphism in coding regions. - Carlos Willian Dias Dantas; Sebastião Rodrigues da Costa Neto; Sandy Ingrid Aguiar Alves; Kenny da Costa Pinheiro; Edian Franklin Franco de Los Santos; Rommel Thiago Juca Ramos (BMC Bioinform., 2024)

Hitac: a hierarchical taxonomic classifier for fungal ITS sequences compatible with QIIME2. - Fábio Malcher Miranda; Vasco Ariston de Carvalho Azevedo; Rommel Thiago Juca Ramos; Bernhard Y. Renard; Vitor Piro (BMC Bioinform., 2024)