Towards Enhanced Retrieval of Biological Models through Annotation-Based Ranking. - Dagmar Köhn; Carsten Maus; Ron Henkel; Martin Kolbe (DILS, 2009)

Distributed Information Retrieval of Computational Biological Models. - Ron Henkel (AlgoSyn, 2010)

Ranked retrieval of Computational Biology models. - Ron Henkel; Lukas Endler; André Peters; Nicolas Le Novère; Dagmar Waltemath (BMC Bioinform., 2010)

Das Sombi-Framework zum Ermitteln geeigneter Suchfunktionen für biologische Modelldatenbasen. - Dagmar Waltemath; Ron Henkel; Holger Meyer 001; Andreas Heuer 001 (Datenbank-Spektrum, 2011)

Considerations of graph-based concepts to manage of computational biology models and associated simulations. - Ron Henkel; Nicolas Le Novère; Olaf Wolkenhauer; Dagmar Waltemath (GI-Jahrestagung, 2012)

Improving the reuse of computational models through version control. - Dagmar Waltemath; Ron Henkel; Robert Hälke; Martin Scharm; Olaf Wolkenhauer (Bioinform., 2013)

Information Retrieval in Life Sciences: A Programmatic Survey. - Matthias Lange 001; Ron Henkel; Wolfgang Müller 001; Dagmar Waltemath; Stephan Weise (Approaches in Integrative Bioinformatics, 2014)

Annotation-Based Feature Extraction from Sets of SBML Models. - Rebekka Alm; Dagmar Waltemath; Olaf Wolkenhauer; Ron Henkel (DILS, 2014)

MaSyMoS: Finding Hidden Treasures in Model Repositories. - Ron Henkel; Dagmar Waltemath (SWAT4LS, 2014)

Supporting situation awareness of dementia patients in outdoor environments. - Philipp Koldrack; Ron Henkel; Frank Krüger 001; Stefan J. Teipel; Thomas Kirste (PervasiveHealth, 2015)

Combining computational models, semantic annotations and simulation experiments in a graph database. - Ron Henkel; Olaf Wolkenhauer; Dagmar Waltemath (Database J. Biol. Databases Curation, 2015)

Annotation-based feature extraction from sets of SBML models. - Rebekka Alm; Dagmar Waltemath; Markus Wolfien; Olaf Wolkenhauer; Ron Henkel (J. Biomed. Semant., 2015)

Finding pattern in biochemical reaction networks - a sub-graph mining approach. - Ron Henkel; Fabienne Lambusch; Dagmar Waltemath (PeerJ Prepr., 2015)

STON: exploring biological pathways using the SBGN standard and graph databases. - Vasundra Touré; Alexander Mazein; Dagmar Waltemath; Irina Balaur; Mansoor A. S. Saqi; Ron Henkel; Johann Pellet; Charles Auffray (BMC Bioinform., 2016)

Finding patterns in biochemical reaction networks. - Ron Henkel; Fabienne Lambusch; Olaf Wolkenhauer; Kurt Sandkuhl; Christian Rosenke; Dagmar Waltemath (PeerJ Prepr., 2016)

Notions of similarity for systems biology models. - Ron Henkel; Robert Hoehndorf; Tim Kacprowski; Christian Knüpfer; Wolfram Liebermeister; Dagmar Waltemath (Briefings Bioinform., 2018)

Identifying frequent patterns in biochemical reaction networks - a workflow. - Fabienne Lambusch; Dagmar Waltemath; Olaf Wolkenhauer; Kurt Sandkuhl; Christian Rosenke; Ron Henkel (PeerJ Prepr., 2018)

COVIDGraph: Connecting Biomedical COVID-19 Resources and Computational Biology Models. - Martin Preusse; Alexander Jarasch; Tim Bleimehl; Sebastian Müller; Jamie Munro; Lea Gütebier; Ron Henkel; Dagmar Waltemath (SEA-Data@VLDB, 2021)

CovidGraph: Integrating COVID-19 Data. - Ron Henkel; Lea Gütebier; Dagmar Waltemath (MIE, 2022)

Contributions to the reuse and reproducibility of computational biology models - Ron Henkel (2022)

CovidGraph: a graph to fight COVID-19. - Lea Gütebier; Tim Bleimehl; Ron Henkel; Jamie Munro; Sebastian Müller; Axel Morgner; Jakob Laenge; Anke Pachauer; Alexander Erdl; Jens Weimar; Kirsten Walther Langendorf; Vincent Vialard; et al. (Bioinform., 2022)

Exploring Use Cases for CovidGraph. - Lea Gütebier; Ron Henkel; Christian Niklas; Dagmar Waltemath (MIE, 2023)

Exploring New Possibilities for Research Data Exploration Using the Example of the German Core Data Set. - Felix Menzel; Dagmar Waltemath; Ron Henkel (MIE, 2023)

The MeDaX Knowledge Graph Prototype. - Judith A. H. Wodke; Lea Michaelis; Ron Henkel (MIE, 2023)

Contributions to the reuse and reproducibility of computational biology models. - Ron Henkel; Dagmar Waltemath (SWAT4HCLS, 2023)

MeDaX project plan: How to sustainably improve biomedical (research) data management. - Judith A. H. Wodke; Ron Henkel; Dagmar Waltemath (SWAT4HCLS, 2023)

TAPP: Defining standard provenance information for clinical research data and workflows - Obstacles and opportunities. - Kerstin Gierend; Judith A. H. Wodke; Sascha Genehr; Robert Gött; Ron Henkel; Frank Krüger 001; Markus Mandalka; Lea Michaelis; Alexander Scheuerlein; Max Schröder; Atinkut Zeleke; Dagmar Waltemath (WWW (Companion Volume), 2023)

MeDaX: A Knowledge Graph on FHIR. - Ilya Mazein; Tom Gebhardt; Lea Michaelis; Dagmar Waltemath; Ron Henkel (MIE, 2024)

MeDaX Prototype v0.2. - Ilya Mazein; Sarah Braun; Tom Gebhardt; Ron Henkel; Lea Michaelis; Dagmar Waltemath; Judith A. H. Wodke (SWAT4HCLS, 2024)

Graph databases in systems biology: a systematic review. - Ilya Mazein; Adrien Rougny; Alexander Mazein; Ron Henkel; Lea Gütebier; Lea Michaelis; Marek Ostaszewski; Reinhard Schneider 002; Venkata P. Satagopam; Lars Juhl Jensen; Dagmar Waltemath; Judith A. H. Wodke; et al. (Briefings Bioinform., 2024)