WORMHOLE: Novel Least Diverged Ortholog Prediction through Machine Learning. - George L. Sutphin; J. Matthew Mahoney; Keith S. Sheppard; David O. Walton; Ron Korstanje (PLoS Comput. Biol., 2016)

Hierarchical analysis of RNA-seq reads improves the accuracy of allele-specific expression. - Narayanan Raghupathy; Kwangbom Choi; Matthew J. Vincent; Glen L. Beane; Keith S. Sheppard; Steven C. Munger; Ron Korstanje; Fernando Pardo-Manual de Villena; Gary A. Churchill (Bioinform., 2018)