PQL: a declarative query language over dynamic biological schemata. - Peter Mork; Ron Shaker; Alon Y. Halevy; Peter Tarczy-Hornoch (AMIA, 2002)

A rule driven bi-directional translation system for remapping queries and result sets between a mediated schema and heterogeneous data sources. - Ron Shaker; Peter Mork; Matt Barclay; Peter Tarczy-Hornoch (AMIA, 2002)

Expression Array Annotation Using the BioMediator Biological Data Integration System and the BioConductor Analytic Platform. - Hao Mei; Peter Tarczy-Hornoch; Peter Mork; Anthony J. Rossini; Ron Shaker; Loren Donelson (AMIA, 2003)

Integration of Data for Gene Annotation Using the BioMediator System. - Brenton Louie; Peter Mork; Ron Shaker; Natali Kolker; Eugene Kolker; Peter Tarczy-Hornoch (AMIA, 2005)

BioMediator Data Integration: Beyond Genomics to Neuroscience Data. - Kelan Wang; Peter Tarczy-Hornoch; Ron Shaker; Peter Mork; James F. Brinkley (AMIA, 2005)

The Multiple Roles of Ontologies in the BioMediator Data Integration System. - Peter Mork; Ron Shaker; Peter Tarczy-Hornoch (DILS, 2005)

Incorporating Uncertainty Metrics into a General-Purpose Data Integration System. - Brenton Louie; Landon Detwiler; Nilesh N. Dalvi; Ron Shaker; Peter Tarczy-Hornoch; Dan Suciu (SSDBM, 2007)